Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq9 143 4e-29 seq1 95.1 2e-14 >seq9 Length=139512083 Score = 143 bits (158), Expect = 4e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| ||||| |||| || |||||| || || || |||| || |||||||||||| Sbjct 127853462 GTCTGGAACAGCCGTTCATCGTCCCATTCCGGGTGCTCCTGTTTAAGCACATCGCACACT 127853521 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 || || ||||||| |||||||| || ||||||||||| |||||||||||||| ||||| Sbjct 127853522 CTATTATGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 127853581 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || || || | || | | ||| || | || || |||||||| | Sbjct 127853582 ACCTCATGCCCCACGGCAAAGCGGAGGTGTTCAGGAGTGTGAGGCGGGTAGATCATCTCG 127853641 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 || || |||||| | | || |||||||| ||||| ||||| |||| Sbjct 127853642 ACTTGAGTGTCTTTGGCTGTCGGAGGATACATCTCACCATCAATTATCT 127853690 Score = 129 bits (142), Expect = 8e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||| ||||||| ||||| || || |||||| | ||| ||| | || Sbjct 127854823 TCTTACCCCATGGCCCTGTCCTTTGGTGAAAGCTGGTCCTCGCTTCTGATCTGTCTTGAA 127854882 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | ||| |||||||||||||| Sbjct 127854883 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGATC 127854942 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 || |||| | || | ||||| |||||||||||| Sbjct 127854943 AGGGATGAACTTTCTTCTTAGAAGTAATTTTTCCACAAC 127854981 Score = 84.2 bits (92), Expect = 3e-11 Identities = 204/301 (68%), Gaps = 10/301 (3%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | | || ||||| || | ||||| ||||| || | Sbjct 127852858 CTTACCCTGCCAGCAATTTGCCTGCTAAATGATTCAACAAATTGGGTGATGCCATGTTCC 127852917 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATG-TAGTCATACTTTGTTTTATCAATCTC 9440 | | || || || ||||| | ||| | || |||| |||| |||||||| Sbjct 127852918 AGTAAGATAGAGTTATTGTAGA-GAAACTGTTGATAGTTGTACTCGTGGCCATCAATCTG 127852976 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 || || || |||| || | ||||||||| || | | |||||||||| | | ||||| Sbjct 127852977 GAAGGCGTCAGGCAGAAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATACG 127853036 Query 9501 ATTTTGGTACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 |||||||| ||||| | | ||| ||||| || || | |||| || | |||| Sbjct 127853037 GTTTTGGTATTGGAATTGCTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGT 127853095 Query 9560 GGTAGCCGCTGAGCTGCTGAACATA--CTGCG-TCACGATAATGTTGATTGTTTCCCCGA 9616 ||||||| || || || || ||||| || || |||| ||| || || ||||| || | Sbjct 127853096 GGTAGCCACTCAGGTGTTGTACATAGTCTTCGATCAC---AATCTTAATCGTTTCTCCTA 127853152 Query 9617 T 9617 | Sbjct 127853153 T 127853153 >seq1 Length=274330532 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/148 (75%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || || ||||| || |||| | || |||||| | || || || |||| | |||| Sbjct 262468170 GTACTCACCCCGTGGCCCAACGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTCT 262468113 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 | || |||||||| ||||| |||||| |||| ||||||||||| | ||||| |||||||| Sbjct 262468112 TGAAGAACTGGTGGGTGAAGTGTTGGGCAAAGAAGGCAAACATGAGGTTGGCGCCCTGGG 262468053 Query 10144 GATCGGGAGTGAAGGTCCTCCGAAGAAG 10171 | || || |||| ||||||| || || Sbjct 262468052 GGTCAGGTATGAACTTCCTCCGGAGTAG 262468025 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || || || || ||||| | |||||||| ||||| |||||| ||| Sbjct 262481283 AAGCCCATCTCGCCACCAAACGTGCTCGCCTTCCAGTACTGAGGGGAACAGATGGGATTC 262481224 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| || |||||||| || ||||| | || | || ||||| || |||||| Sbjct 262481223 CCTAAGAGGCCCTTAAGGGAAAAAGGGGCCCCAATTTCTATCATACTCTCCCCAAAGATG 262481164 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| || || ||| || | | | || | ||| ||||||| || ||||||||| Sbjct 262481163 GAGTTTGGGAGGCACTTCTCGAGAAGCAGCCCTGGGTAGAACTCCAAGGCATCGATGTCT 262481104 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || || || | || || || || ||||| |||||| Sbjct 262481103 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 262481062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708519370928720