Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq15 143 3e-29 seq5 100 3e-16 seq4 89.7 5e-13 >seq15 Length=140412725 Score = 143 bits (158), Expect = 3e-29 Identities = 598/941 (64%), Gaps = 29/941 (3%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || |||||||| || | ||| ||| ||| | ||||| | |||||| | Sbjct 19879760 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCCGACTCGACATCACTCCCATCCT 19879701 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | ||||| || || | || || ||||| ||||||| ||| ||| || Sbjct 19879700 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCTTCCAGTGAAATATTCTC 19879641 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA 21306 |||||| ||||| |||||||| | | || | || | | ||||| || | Sbjct 19879640 CATAAAGTCAAAGGGATTTTCTACTCTGAAAACCTTGCTGAAGCCCAGCTCCAGCCTGAG 19879581 Query 21307 TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTT 21366 ||| ||||| || || || || || || |||||| |||||||| || | | || Sbjct 19879580 TCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAATTCATCCCAGTGAGCTT 19879521 Query 21367 TACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATT 21426 || || || | | | | || || | |||||| || || | | ||||| | Sbjct 19879520 CACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACTGCATTGATGATTATTTC 19879461 Query 21427 TATTATCCTAGATG-TACTAGGG---GGATACAATAATTGTTTAAACATCAAACATGCAA 21482 | | | || || | | | || | || | | |||| ||||||| || |||| Sbjct 19879460 TTTCACTCTC--TGCTCCGAAGGTTTGTGTAGCAGGA--GTTTGAACATCAGGCAGGCAA 19879405 Query 21483 AATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCA 21542 | || || || ||||| ||||| || || || | || | || |||| Sbjct 19879404 AGTCGCAGTGTAAACCCTCATCTCTGCTAAT--------------ACGTCAGGCCAGGCA 19879359 Query 21543 TTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCT 21602 | | ||||| || || | ||| ||| | || ||||| | || ||||||||||| || | Sbjct 19879358 TCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAAAAGAAAATTCCTT 19879299 Query 21603 CAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATT 21662 | ||||||||||| | | | ||||| || || || ||||| ||| ||||| | Sbjct 19879298 CCACGGCAGCAAAGGTGATGACACGTTCTCCACGTGGAGCCTCTTTGTCCCCCATCCAGT 19879239 Query 21663 TTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGA 21721 ||||| | ||||| ||||||| |||| ||||| || || || || || ||| Sbjct 19879238 GCAAGGCCCAGTCTGCCTCCTTCTTTAC-ACAAGGCATTGTCTCGATGGCATTGAAGAGA 19879180 Query 21722 TGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAA 21781 | |||| | ||| | ||| ||||||||||||||| Sbjct 19879179 AATTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAGGAGGCTATACATTTCAGAA 19879120 Query 21782 TGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACC 21841 ||||| ||||| || || || || || || || ||||| | || |||| | |||| Sbjct 19879119 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTCTGTAATCTGAATT 19879060 Query 21842 TCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAAT 21901 || ||| | | |||||||||||| || || |||||||| || ||||| || Sbjct 19879059 TCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCACTTGCTGCAAAGAAA 19879000 Query 21902 GCCAATAT-ATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAA 21960 ||||| || || | |||||||||| || ||| || || ||||| | | | | Sbjct 19878999 GCCAAGATGATGTGAAATAAAATATCTCTCCTTA-GGCTTCATGGTTTCCCA-GTGTTGA 19878942 Query 21961 AT--CTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATAC 22018 || | || || | | || || |||| |||||||||| ||| ||||| |||||| Sbjct 19878941 ATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCTGCCTTCTTATAC 19878882 Query 22019 ATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 || |||||| |||| ||| | || ||||| || ||||| Sbjct 19878881 ATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq5 Length=104526007 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || ||||| ||||||| | | | ||| ||| | ||||| ||| || | | | Sbjct 62198864 AGCTCCTCTTCGGTTTCAAACTGAGCCAGATGAGCTTCTAATGAGACACAGAACATCTGG 62198923 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | | |||||| || |||| ||||||||||| ||||| || ||| ||||||||||||| Sbjct 62198924 CTGACTGTCCAGTTCTTTGCGTCTTCAGAAAAATAAAAACACTTACTTCCAAATCCAATC 62198983 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| |||||||| Sbjct 62198984 CATCCTTTTGGGCAGGTAACATA 62199006 >seq4 Length=130910915 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| |||||||| | ||| ||||||||| ||| || ||| | | | | Sbjct 34856280 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATCACTGCAAAAC 34856221 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 34856220 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 34856161 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 34856160 CCATAAAATCAAAGGGATTTTC 34856139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531896724310120