Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq9 114 3e-20 >seq9 Length=139512083 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || ||||||| ||||||||||| || || ||| Sbjct 6039678 GCTCAGCAGCTTTGGTATGCCATCATCGAGTCGCAGACAGAGACAGGAACCCCATACATG 6039619 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || ||||| | Sbjct 6039618 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACAATCAAATGC 6039559 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || |||||| Sbjct 6039558 AGCAACCTGTGCACAGAAATAGTGGAGTACACC 6039526 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 |||| ||| |||| |||| || || ||||||| |||| || || ||||||||||| Sbjct 6028093 CAGAGCATACCAGAGATTCCTGATGACCTGAAGCAGCTTTATAAGACTGTATGGGAAATC 6028034 Query 365011 TCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAG 365070 ||| | |||| || | | ||||| || || | || ||||| || ||| |||||| Sbjct 6028033 TCCCAGAAAACTGTCCTCAAGATGGCAGCTGAGAGAGGCGCTTTCATTGATCAAAGCCAG 6027974 Query 365071 TCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC 365130 || || ||| || ||| || |||| | || | ||| || || ||||| |||||| Sbjct 6027973 TCTTTGAACATACACATTGCTGAGCCCAACTATGGCAAACTCACGAGTATGCACTTCTAC 6027914 Query 365131 GGGTGGAAA 365139 || |||||| Sbjct 6027913 GGCTGGAAA 6027905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303343363379366