Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq14 111 1e-19 seq12 105 5e-18 >seq14 Length=141755446 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 28258188 CCCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 28258129 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || ||| | || |||| ||| ||||| || Sbjct 28258128 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 28258069 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||||||| || ||| | | ||| || | | | ||||| | ||||||| Sbjct 28258068 GATGCCCTCTTTTTCTTGAATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 28258009 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| ||||||||| || || |||| || || ||||| ||||||||| Sbjct 28258008 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTTACAAAGATCTGCATT 28257960 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 28259328 CCCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 28259269 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || ||| | || |||| ||| ||||| || Sbjct 28259268 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 28259209 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| || | | ||| || | | | ||||||| ||||||| Sbjct 28259208 GATGCCTTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 28259149 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || |||| || || ||||| |||||||| Sbjct 28259148 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 28259101 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 28258416 CCCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 28258357 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || ||| | || |||| ||| ||||| || Sbjct 28258356 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 28258297 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| || | | ||| || | | | ||||||| ||||||| Sbjct 28258296 GATGCCTTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 28258237 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || |||| || || || || |||||||| Sbjct 28258236 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28258189 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 28258644 CCCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 28258585 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || ||| | || |||| ||| ||||| || Sbjct 28258584 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 28258525 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| || | | ||| || | | | ||||||| ||||||| Sbjct 28258524 GATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCAC 28258465 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || |||| || || || || |||||||| Sbjct 28258464 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28258417 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 28258872 CCCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 28258813 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || ||| | || |||| ||| ||||| || Sbjct 28258812 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 28258753 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| || | | ||| || | | | ||||||| ||||||| Sbjct 28258752 GATGCCTTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 28258693 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || |||| || || || || |||||||| Sbjct 28258692 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28258645 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 28259100 CCCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 28259041 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || ||| | || |||| ||| ||||| || Sbjct 28259040 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 28258981 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| || | | ||| || | | | ||||||| ||||||| Sbjct 28258980 GATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCAC 28258921 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || |||| || || || || |||||||| Sbjct 28258920 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28258873 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 28259556 CCCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 28259497 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || ||| | || |||| ||| ||||| || Sbjct 28259496 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 28259437 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| || | | ||| || | | | ||||||| ||||||| Sbjct 28259436 GATGCCTTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 28259377 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || |||| || || || || |||||||| Sbjct 28259376 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28259329 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 28259784 CCCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 28259725 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || ||| | || |||| ||| ||||| || Sbjct 28259724 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 28259665 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| || | | ||| || | | | ||||||| ||||||| Sbjct 28259664 GATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 28259605 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || |||| || || || || |||||||| Sbjct 28259604 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28259557 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 28260012 CCCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 28259953 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || ||| | || |||| ||| ||||| || Sbjct 28259952 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 28259893 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| || | | ||| || | | | ||||||| ||||||| Sbjct 28259892 GATGCCTTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 28259833 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || |||| || || || || |||||||| Sbjct 28259832 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28259785 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 28260240 CCCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 28260181 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || ||| | || |||| ||| ||||| || Sbjct 28260180 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 28260121 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| || | | ||| || | | | ||||||| ||||||| Sbjct 28260120 GATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 28260061 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || |||| || || || || |||||||| Sbjct 28260060 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28260013 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 28260468 CCCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 28260409 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || ||| | || |||| ||| ||||| || Sbjct 28260408 CAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 28260349 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| || | | ||| || | | | ||||||| ||||||| Sbjct 28260348 GATGCCTTCCTTGTCTTGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCAC 28260289 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || |||| || || || || |||||||| Sbjct 28260288 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28260241 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||| | || ||| | || Sbjct 28260681 CAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 28260622 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || || || ||| | || |||| ||| ||||| || | ||| || ||||| Sbjct 28260621 TTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTC 28260562 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 || | | ||| || | | | ||||||| ||||||| ||||| ||||||||| Sbjct 28260561 TTGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGT 28260502 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||| || || || || |||||||| Sbjct 28260501 CTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28260469 >seq12 Length=61602749 Score = 105 bits (116), Expect = 5e-18 Identities = 156/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||| || |||||||| || || |||||||| || | | || | | || Sbjct 59171882 CAGAACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 59171941 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| || ||||| ||| | || |||| ||| ||||| || | |||||| || || Sbjct 59171942 CTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATC 59172001 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||||||| |||| ||||||| Sbjct 59172002 CTGGATCTTGGC--CTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 59172059 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || |||||||| || || || || |||||||||||| Sbjct 59172060 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 59172098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405084973612870