Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq15 316 3e-81 seq9 131 2e-25 seq3 114 2e-20 seq4 111 2e-19 >seq15 Length=140412725 Score = 316 bits (350), Expect = 3e-81 Identities = 429/599 (72%), Gaps = 18/599 (3%) Strand=Plus/Minus Query 32647 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 32706 |||| ||||||| || || || |||||||||| |||||| ||||| ||||| Sbjct 19879425 GTTTGAACATCAGGCAGGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAAT-------- 19879374 Query 32707 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 32766 |||| || || ||||| || || || || || ||||| ||| |||| ||||| | Sbjct 19879373 ------ACGTCAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAG 19879320 Query 32767 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---AC 32823 | |||||||||||||||||||| || || ||||||| || | | |||||| | Sbjct 19879319 AACCAGAAAAGAAAATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCCACGTGGAG 19879260 Query 32824 CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 32883 | | |||| ||||| | ||||| || |||| ||| |||||||||||||||| Sbjct 19879259 CCTCTTTGTCCCCCATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTG 19879200 Query 32884 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 32943 |||| || ||||| |||||| | | |||| || |||||| | || |||||||| | Sbjct 19879199 TCTCGATGGCATTGAAGAGAAATTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGA 19879140 Query 32944 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATC 33003 || ||||||||||| ||||| |||||||| ||||| ||||| || || ||||| || | Sbjct 19879139 GGAGGCTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAC 19879080 Query 33004 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33063 ||| || |||||||| | |||| | ||| | || | || ||||||| ||| || | Sbjct 19879079 GAGCTTCTGTAATCTGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGC 19879020 Query 33064 CGTCACTGGCTGCAAAAAACGCCAATA-CATGTTTTATAAAATATTTTTCGTCTGGTGTT 33122 | ||||| |||||||| || ||||| | |||| ||||||||| | || | || | Sbjct 19879019 CATCACTTGCTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTC 19878960 Query 33123 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 33182 | | | ||| | | || | || || | |||| || || |||||||||| || Sbjct 19878959 ATGGTTTCCCAGTGTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAA 19878900 Query 33183 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 ||||||||||| |||||||| | |||||||||||| |||| || ||||| || ||||| Sbjct 19878899 GCCTCTGCCTTCTTATACATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq9 Length=139512083 Score = 131 bits (144), Expect = 2e-25 Identities = 105/127 (83%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| |||||||| ||||||||||| || ||||| | Sbjct 6031377 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATATTACTGGTGTAAGGTTCAATG 6031436 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||||||||||||||| ||||| || || ||||| ||||| ||||| | | ||| Sbjct 6031437 GACTCATTATTTCCCAAAATCTGAGCGGTGGAAGCAGTAGGCATCGGTGCGATAAGTAAG 6031496 Query 62312 CTATTTC 62318 || |||| Sbjct 6031497 CTGTTTC 6031503 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || ||||||||||| |||||| ||| | || || || || || || | Sbjct 6027907 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGTATGT 6027966 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 6027967 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCAGCTGCCATCTTGAGGACAGTTT 6028026 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | ||| ||||||| |||| | || || |||| Sbjct 6028027 TCTGGGAGATTTCCCATACAGTCTTATAAAGCTGCTTCAGGTCATCAGGAA 6028077 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 6041734 CTCCACTCGCTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGGTCCCTGGCACG 6041793 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || || ||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 6041794 CTGCTCTTCCTTCCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 6041853 Query 63187 CGGTTCCA 63194 || |||| Sbjct 6041854 AGGCTCCA 6041861 >seq3 Length=132848913 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | |||||||||||| || || || ||||| || || || || | Sbjct 126360977 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCT 126361036 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| |||||||| ||||| || ||||||||||| || ||||| || || ||||||| Sbjct 126361037 TGAGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGG 126361096 Query 32803 C 32803 | Sbjct 126361097 C 126361097 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | || || || || | || ||||||||||| ||||| |||||||| ||||| Sbjct 126363343 ATCTTTGATGTAAGTGTCGATGAGGAGGCTATACATTTCAGAATGTATGTTTTCCATGGC 126363402 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || || ||||| || | ||| ||||||||||| |||||| Sbjct 126363403 AATTTGGAAGCCATAGAAACAACGAGCTTCGGTAATCTGAACTTCT 126363448 >seq4 Length=130910915 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | ||| ||||||||||||||||| ||||| || || | || | Sbjct 34847659 CCTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCT 34847600 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||| Sbjct 34847599 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 34847540 Query 32803 C 32803 | Sbjct 34847539 C 34847539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633627144794800