Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq14 109 5e-19 >seq14 Length=141755446 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || ||||||||||| ||||| ||||| ||||||| | ||||||||| | Sbjct 28257958 ACAATGCAGATCTTTGTAAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCC 28258017 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| || ||| | ||| || || || ||||| || || || || ||| Sbjct 28258018 AGTGACACCATTGAGAATGTCAAGGGGAAGATTCAAGAAAAAGAGGGCATCCCCCCAGAC 28258077 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || |||||||| || || | ||||||| ||||| || || ||| Sbjct 28258078 CAGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 28258137 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || ||||| || || | || || | || ||||| || Sbjct 28258138 AACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGAGGTGG 28258187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324762633595