Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq15 244 1e-59 seq3 95.1 1e-14 >seq15 Length=140412725 Score = 244 bits (270), Expect = 1e-59 Identities = 431/622 (69%), Gaps = 21/622 (3%) Strand=Plus/Minus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 ||| |||| | ||| ||||||||| |||||||| || |||| || || || Sbjct 19879423 TTGAACATCAGGCAGGCAAAGTCGCAGTGTAAACCCTCATCTC-TGCTA-------AT-- 19879374 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 | || | || || | ||||||||||||||||||||| ||| | || |||||| | Sbjct 19879373 ----ACGTCAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAA 19879318 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 |||||||| || || ||||||||||| ||||| | | | |||||| || || Sbjct 19879317 CCAGAAAAGAAAATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCCACGTGGAGCC 19879258 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | ||||| | || ||||| || || | ||||| | |||||| | ||| Sbjct 19879257 TCTTTGTCCCCCATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTC 19879198 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| || || || || | || | || | |||||| ||||| ||||| || | Sbjct 19879197 TCGATGGCATTGAAGAGAAATTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAGG 19879138 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 || ||||||||||||||| | || ||||| ||||||||||| || |||||||| | | Sbjct 19879137 AGGCTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGA 19879078 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 ||||| || ||||| | |||||| ||| | ||| || | ||||||| || || ||| Sbjct 19879077 GCTTCTGTAATCTGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCA 19879018 Query 93500 TCGGATGCTGCaaaaaaaGCCAATAT-ATGCTTTATAAAATGTTTCTCATCA-TCTTTAA 93557 || ||||||||| |||||||| || ||| ||||||| | |||| | | ||| | Sbjct 19879017 TCACTTGCTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTCAT 19878958 Query 93558 GCTTATCCCAATCGGATAGAT--CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 | || ||||| | | | || | || || || | || || || | |||||||| || Sbjct 19878957 GGTT-TCCCAGT--GTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGA 19878901 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 || ||||| || || ||||| | ||| ||||| || |||| || ||||| |||||||| Sbjct 19878900 AGCCTCTGCCTTCTTATACATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 Query 93676 ACGATTAGGGTTATCTTTTAGT 93697 | |||||| ||| | ||| Sbjct 19878840 GCAGCGAGGGTTTTCTCTCAGT 19878819 >seq3 Length=132848913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || ||||| | || ||||||||||||||| | || ||||| Sbjct 126363341 GAATCTTTGATGTAAGTGTCGATGAGGAGGCTATACATTTCAGAATGTATGTTTTCCATG 126363400 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | |||||| || ||||| |||||||| Sbjct 126363401 GCAATTTGGAAGCCATAGAAACAACGAGCTTCGGTAATCTGAACTTCTTG 126363450 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | ||||||||||||||||||||| ||||| || |||||| |||||||| || Sbjct 126361015 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAG 126361074 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 || ||||||||||| ||||| || || | ||||| Sbjct 126361075 ATGCCTTCCACGGCGGCAAAGGCTACGACCCGTTC 126361109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856533054120