Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 7e-15 seq9 87.8 3e-12 seq4 87.8 3e-12 >seq3 Length=132848913 Score = 96.9 bits (106), Expect = 7e-15 Identities = 98/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| ||||||| || ||||||||||| || || | || || ||||| |||||| Sbjct 126361100 GTAGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGGTCTTTTGCATCCATATTCTGG 126361041 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | |||||| || || ||||| || |||||||| || ||||| || Sbjct 126361040 CTCAAGAAACGAGGACT-GATGCCTGGCCTGACCTTTTCCAACGAACTTATTAGCAGAGA 126360982 Query 42827 CGAGG 42831 |||| Sbjct 126360981 TGAGG 126360977 >seq9 Length=139512083 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||| ||||| |||||||||||||| | |||||| || Sbjct 6041743 CTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGGTCCCTGGCACGCTGCTCTTC 6041802 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | || ||||||||| | | || | || ||||||| ||| | ||||| ||||||| Sbjct 6041803 CTTCCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGCTCCAG 6041862 Query 245128 GTAGACAGCGAGGGCGCCGGGCCGCT 245153 || | ||| | || || || |||| Sbjct 6041863 ATAAATAGCAAATGCCCCAGGTCGCT 6041888 >seq4 Length=130910915 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| |||| |||||| | || || || || || ||||||||||| | || || Sbjct 34847524 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 34847583 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||| | ||| | | |||| | ||||| |||||||| || || || ||||| Sbjct 34847584 GCTATATTCTGGTTAAAGAAAAGAGGTCT-TATGCCTGGACTCACGTTTTCCAATGAACT 34847642 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||| || |||| Sbjct 34847643 CATCAGCAGAGATGAGG 34847659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944331964000880