Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 2e-11 >seq5 Length=104526007 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 20192 TAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGA 20251 |||| ||| |||| |||||| | ||| | ||| || || | | ||||| ||||| || Sbjct 23434307 TAGACGTGTGCATATCCCAAAGCGTGTACAAAGTCGCCCAGCTTCAGACCTGTAACGTGT 23434366 Query 20252 GCAAGCATATAAGTTAAGAGGGAA-TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 | | | | || || | ||||| |||||| ||||| || || || |||| |||| Sbjct 23434367 GTGATCGTGTAGGTGAGCAGGGAGGTAGCTGCTGATGTTGAAGGGCACACCCAGGACCAT 23434426 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACA 20370 |||||||||||||||| ||||| |||| ||||||| || ||||| | || || || Sbjct 23434427 --CTCCCGACCTCTGATATAGCTGGCAGGGCAGCTCACAGTTCACTACACAGAACTGGCA 23434484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441369417980920