Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq12 113 1e-19 seq1 100 7e-16 seq7 93.3 1e-13 seq15 87.8 4e-12 >seq12 Length=61602749 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||||| ||||| || || || | || ||||| || ||| Sbjct 59171427 AGGACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 59171486 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || ||||| ||||| || | ||| || | || || ||||| |||||| Sbjct 59171487 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 59171546 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || ||||| || || || | || || | || || || || ||||| ||| Sbjct 59171547 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 59171606 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||| ||||| ||||| |||||||| Sbjct 59171607 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 59171638 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||||| ||||| || || || | || ||||| || ||| Sbjct 59171655 AGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 59171714 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || ||||| ||||| || | ||| || || ||| || ||||| ||| Sbjct 59171715 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGG---TCGGGGGGAATGCCTTCCTTA 59171771 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || ||||| || || || | || || | || || || || ||||| Sbjct 59171772 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 59171831 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||| ||||| ||||| |||||||| Sbjct 59171832 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 59171866 Score = 107 bits (118), Expect = 5e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||||| ||||| || || || | || ||||| || || Sbjct 59171883 AGAACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCC 59171942 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || ||||| ||||| || | ||| || || ||| || || || ||| Sbjct 59171943 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGG---TCGGGGGGAATGCCCTCCTTA 59171999 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || ||||| || || || | || || | || || || || ||||| Sbjct 59172000 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 59172059 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| |||||||| ||||| ||||| ||||||||| || Sbjct 59172060 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 59172098 >seq1 Length=274330532 Score = 100 bits (110), Expect = 7e-16 Identities = 161/231 (70%), Gaps = 18/231 (8%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTA-AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||| | ||||| ||| | ||||||| ||| || ||||| || || ||||| | Sbjct 255801303 CCACCACCAAGTCTCCAGTGCAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 255801362 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATC 288362 | || ||||| ||||| | ||| || || || ||||||| | |||| | || | Sbjct 255801363 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAGAGATCAGTCTTTGCTGGTCAGGA-- 255801420 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || |||||||| ||||||||||| || || || | |||||||| | ||| | Sbjct 255801421 -GGAATTCCTTCCTTATCCTGGATCTTAGCATTTATATTTTCTATTGTATCAC------- 255801472 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || ||||| |||| || ||||||||||| Sbjct 255801473 ----TCGAGAGTGATGGTCTTGCCTGTCAGCCTCTTCACAAATATCTGCAT 255801519 >seq7 Length=121844099 Score = 93.3 bits (102), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | ||| ||||||| ||| | ||||| | | ||||| Sbjct 52639606 CCACCACGAAGTCTCAATACAAGATGAAGAGTGGACACCTTTTGAGTGTCGTAGTC---- 52639551 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || |||| ||||| | ||| || || || ||| |||| | || || | || Sbjct 52639550 AAAGTAGGTCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGGTCAGGCGGA 52639491 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||| ||||||||||| || || || || ||||||| | ||| | ||| || Sbjct 52639490 ATTCCTATCTTATCCTGGATCTTAGCCTTTACATTTTCTAATGTATCTGAGGGTTCAACC 52639431 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 52639430 TCGAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAATATATGCAT 52639384 >seq15 Length=140412725 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||| ||| ||| || || || | ||| || | |||||| | ||||| ||||| ||| Sbjct 63374182 TCTGTTTAGATGTTGTAATCAGAGAGA-TGTTACTGTCTTCCAGCTGTTTGCCTGCAAAG 63374124 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || | |||| || ||||| ||||||||||| || || ||||| || Sbjct 63374123 ATGAGCCGCTGCTGGTCAGCTGG-ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 63374065 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| | ||| | |||||| | Sbjct 63374064 TC-ATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCTGGTTAAGGTCTTGGTG 63374006 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 63374005 AAGATTTGCATT 63373994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179645134920614