Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq12 143 3e-29 seq14 132 5e-26 seq15 100 3e-16 seq1 89.7 5e-13 >seq12 Length=61602749 Score = 143 bits (158), Expect = 3e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || ||||| || ||||||||||| | | ||||| | ||| Sbjct 59171655 AGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 59171714 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||||| |||||||||||| ||||| ||||| || || Sbjct 59171715 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCC 59171774 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || ||||| || | || | |||| Sbjct 59171775 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 59171834 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || ||||| || ||||| Sbjct 59171835 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 59171866 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || ||||| || ||||||||||| | | ||||| | ||| Sbjct 59171427 AGGACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 59171486 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||||| ||||||||| || ||||| ||||| || || Sbjct 59171487 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 59171546 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || ||||| || | || | |||| Sbjct 59171547 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 59171606 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || ||||| || ||||| Sbjct 59171607 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 59171638 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || ||||| || ||||||||||| | | ||||| | || Sbjct 59171883 AGAACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCC 59171942 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||||| |||||||||||| ||||| || || || || Sbjct 59171943 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCC 59172002 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || ||||| || | || | |||| Sbjct 59172003 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 59172062 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||||| || || ||||| || |||||||| Sbjct 59172063 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 59172097 >seq14 Length=141755446 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||||| | ||||| |||||||| ||| Sbjct 28258157 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCG 28258098 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || ||||||||||| || || ||| Sbjct 28258097 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCTTGAATCTTCCCCTTG 28258038 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || |||||||| | || | |||||| || ||||| || Sbjct 28258037 ACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTC 28257978 Query 64427 TTTACGAAAATTTGCATT 64444 ||||| || || |||||| Sbjct 28257977 TTTACAAAGATCTGCATT 28257960 >seq15 Length=140412725 Score = 100 bits (110), Expect = 3e-16 Identities = 144/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||| ||| ||||||||||| | || | || |||||| ||||| ||||| Sbjct 63374188 GTCGACTCTGTTTAGATGTTGTAATCAGAGA-GATGTTACTGTCTTCCAGCTGTTTGCCT 63374130 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||||||||||||| | || || ||||| || || || || || ||| Sbjct 63374129 GCAAAGATGAGCCGCTGCTGGTCAGCTGG-ATGCCTTCCTTATCCTGGATCTTGGCCTTC 63374071 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || || || |||| || ||||| || | || | |||||||| ||| || || Sbjct 63374070 ACATTCT-CATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCTGGTTAAGGTC 63374012 Query 64427 TTTACGAAAATTTGCATTT 64445 || ||| |||||||||| Sbjct 63374011 TTGGTGAAGATTTGCATTT 63373993 >seq1 Length=274330532 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/209 (69%), Gaps = 11/209 (5%) Strand=Plus/Plus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| || || || |||||||||||||| || | | || || | ||||| || Sbjct 255801325 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGT 255801384 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||||||| ||| | || || | |||||||| |||||||||||||| || || || || Sbjct 255801385 TGCTTGCCAGCAGAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATC 255801444 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || |||| | || | |||||||| || | ||| | ||||||||| Sbjct 255801445 TTAGCATTTATATTTTCTATTGTATCAC-----------TCGAGAGTGATGGTCTTGCCT 255801493 Query 64418 GTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||| | || || || || ||||| || Sbjct 255801494 GTCAGCCTCTTCACAAATATCTGCATCTT 255801522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499640971471720