Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq14 89.7 5e-13 >seq14 Length=141755446 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || ||| || || || || || |||| | Sbjct 28259294 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28259235 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| ||| || || | Sbjct 28259234 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACG 28259175 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||| || | || | || |||||||||| || || Sbjct 28259174 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28259115 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 28259114 ACAAAGATCTGCAT 28259101 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| |||| || || || | | | |||||||| || ||||||||||| | Sbjct 28260695 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 28260636 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || || || || || |||| | |||| || | ||| ||||| || || Sbjct 28260635 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 28260576 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | ||||||| | | |||||| Sbjct 28260575 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACT 28260516 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||||| || || || || |||||||| Sbjct 28260515 TCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28260469 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || ||| || || || || || |||| | Sbjct 28258382 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28258323 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| ||| || || | Sbjct 28258322 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACG 28258263 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||| || | || | || |||||||||| || || Sbjct 28258262 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28258203 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 28258202 ACGAAGATCTGCAT 28258189 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || ||| || || || || || |||| | Sbjct 28258610 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28258551 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| ||| || || | Sbjct 28258550 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACA 28258491 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||| || | || | || |||||||||| || || Sbjct 28258490 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28258431 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 28258430 ACGAAGATCTGCAT 28258417 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || ||| || || || || || |||| | Sbjct 28258838 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28258779 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| ||| || || | Sbjct 28258778 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACG 28258719 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||| || | || | || |||||||||| || || Sbjct 28258718 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28258659 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 28258658 ACGAAGATCTGCAT 28258645 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || ||| || || || || || |||| | Sbjct 28259066 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28259007 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| ||| || || | Sbjct 28259006 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACA 28258947 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||| || | || | || |||||||||| || || Sbjct 28258946 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28258887 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 28258886 ACGAAGATCTGCAT 28258873 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || ||| || || || || || |||| | Sbjct 28259522 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28259463 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| ||| || || | Sbjct 28259462 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACG 28259403 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||| || | || | || |||||||||| || || Sbjct 28259402 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28259343 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 28259342 ACGAAGATCTGCAT 28259329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || ||| || || || || || |||| | Sbjct 28259750 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28259691 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| ||| || || | Sbjct 28259690 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACG 28259631 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||| || | || | || |||||||||| || || Sbjct 28259630 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28259571 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 28259570 ACGAAGATCTGCAT 28259557 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || ||| || || || || || |||| | Sbjct 28259978 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28259919 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| ||| || || | Sbjct 28259918 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACG 28259859 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||| || | || | || |||||||||| || || Sbjct 28259858 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28259799 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 28259798 ACGAAGATCTGCAT 28259785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || ||| || || || || || |||| | Sbjct 28260206 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28260147 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| ||| || || | Sbjct 28260146 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACG 28260087 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||| || | || | || |||||||||| || || Sbjct 28260086 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28260027 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 28260026 ACGAAGATCTGCAT 28260013 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || ||| || || || || || |||| | Sbjct 28260434 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28260375 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| ||| || || | Sbjct 28260374 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACA 28260315 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | |||||| || | || | || |||||||||| || || Sbjct 28260314 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28260255 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 28260254 ACGAAGATCTGCAT 28260241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258597389360