Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq9 152 7e-32 seq1 98.7 1e-15 >seq9 Length=139512083 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || |||| | | || || ||||||||||||| || ||||| || |||||||| || Sbjct 127853462 GTCTGGAACAGCCGTTCATCGTCCCATTCCGGGTGCTCCTGTTTAAGCACATCGCACACT 127853521 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 || || ||||| | |||||| || |||||||||||||| | ||| ||||| | |||||| Sbjct 127853522 CTATTATGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 127853581 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || |||| |||||| |||||||| || | || || | |||| || | ||| | Sbjct 127853582 ACCTCATGCCCCACGGCAAAGCGGAGGTGTTCAGGAGTGTGAGGCGGGTAGATCATCTCG 127853641 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || || || |||||| | || || |||||||| ||||| ||||| Sbjct 127853642 ACTTGAGTGTCTTTGGCTGTCGGAGGATACATCTCACCATCAAT 127853685 Score = 150 bits (166), Expect = 3e-31 Identities = 216/302 (72%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| | || || || || || |||||||| || ||||| |||||||| | Sbjct 127851953 AACACTGAATGAGGTAAAAGGGCAGCCTTTCACATTATTGCAGATGAGAGACTGAATCGA 127852012 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | |||||||| || || || || || || || ||||||||| | Sbjct 127852013 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTACTAGGCTTCCAGTACTC 127852072 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGC-TCGA 9053 || || ||||| || |||| || ||||||||||| || || | | ||||| || | Sbjct 127852073 AGGAGAACAGATAGGATTACCCATAAGTCCTTTCAAGGAGAATGG-GGCTCCAGCTTCTA 127852131 Query 9054 TGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGA 9113 ||| |||| || ||||||||| | || || || ||||| || | | | ||| || | Sbjct 127852132 CCATGGTCTCCCCAAAGATGGCATCTGGGCGAGGCTTTTCTACCAGAAGGGCAGGATACA 127852191 Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173 | || | || || | ||| |||||||| ||||| ||||| ||||| || |||||||| | Sbjct 127852192 GCTCCATGGCATCAATGTCACCATAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 127852251 Query 9174 CT 9175 || Sbjct 127852252 CT 127852253 Score = 116 bits (128), Expect = 5e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| ||| |||| | |||||||| ||||||||| | ||| ||| | || Sbjct 127854823 TCTTACCCCATGGCCCTGTCCTTTGGTGAAAGCTGGTCCTCGCTTCTGATCTGTCTTGAA 127854882 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| ||| |||||||||||||| Sbjct 127854883 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGATC 127854942 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | || | ||| ||||||| | |||||||||| || Sbjct 127854943 AGGGATGAACTTTCTTCTTAGAAGTAATTTTTCCACAACTTCCTTTGAATCGGGAAG 127854999 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| ||| || ||||| |||| ||| ||| Sbjct 127855434 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAGCTCTGGTA 127855493 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || ||||| ||||||||||| || |||||||| | | ||||| Sbjct 127855494 TAATAGGAGAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGCATATTGTAAGTT 127855553 Query 10507 GGGGGACTGTCAATCA 10522 || || || ||||||| Sbjct 127855554 GGTGGGCTATCAATCA 127855569 >seq1 Length=274330532 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || || ||||| | ||||||||| ||||| |||||| ||| | | ||| Sbjct 262481274 TCGCCACCAAACGTGCTCGCCTTCCAGTACTGAGGGGAACAGATGGGATTCCCTAAGAGG 262481215 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACC-GGG 9081 || || | |||||| || ||||| | || || || ||||| || ||||||| ||| Sbjct 262481214 CCCTTAAGGGAAAAAGGGGCCCCAATTTCTATCATACTCTCCCCAAAGATGGAGTTTGGG 262481155 Query 9082 ACGCGGTTTTTCGACGATGAAGCCA-GTGTAGAGTTCGACAGCCTCGACGTCGCCATAGA 9140 | || || | ||| || | |||| | ||||| || | || |||| ||| ||||| | Sbjct 262481154 AGGCACTTCT-CGA-GAAGCAGCCCTGGGTAGAACTCCAAGGCATCGATGTCTCCATACA 262481097 Query 9141 GGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAAG 9180 | | |||||||| || || ||||||||||| |||||||| Sbjct 262481096 GCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCTACAAG 262481057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723722454434200