Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq9 87.8 3e-12 >seq9 Length=139512083 Score = 87.8 bits (96), Expect = 3e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | |||||| | ||||||| |||||| || || ||||| ||||| Sbjct 6027908 CCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGTATGTT 6027967 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 || |||||||||||| || |||||| ||||| | || || ||||| |||| | || | Sbjct 6027968 CAAAGACTGGCTTTGATCAATGAAA-GCGCCTCTCTCAGCTGCCATCTTGAGGACAGTTT 6028026 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || ||||| || ||||| Sbjct 6028027 TCTGGGAGATTTCCCATACAGTCTT 6028051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795149107123280