Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq7 125 3e-23 seq1 91.5 6e-13 >seq7 Length=121844099 Score = 125 bits (138), Expect = 3e-23 Identities = 319/485 (66%), Gaps = 3/485 (1%) Strand=Plus/Minus Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141 ||| || | ||||| || | |||||| |||||| | |||||| | | | | ||||| | Sbjct 23912142 AATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCT 23912083 Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCC 451201 || ||| || | ||| | | ||| | | ||| | ||| || ||| |||||| Sbjct 23912082 GTAGTGCAATCCGATATGAAACTTTGGCCTTTTCAAGTAATTAATGAAGGAGGCAAGCCC 23912023 Query 451202 TATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCT 451261 | | || || ||||| || | ||| | || ||||| ||||| || ||| Sbjct 23912022 AAGGTAATGGTTTCCTACAAAGGGGAGAAAAAAGCCTTCTACCCTGAGGAAATCTCTTCT 23911963 Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321 ||||| || || || ||||| || || || || | | | || | | || || || Sbjct 23911962 ATGGTACTGACCAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCTACACTGTCACCAAT 23911903 Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || ||||| || || ||||||||||| | ||||| || || || || |||||| Sbjct 23911902 GCTGTGATCACTGTGCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCA 23911843 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||||| ||| | ||||| || ||||||| |||||||| ||||| ||||| | Sbjct 23911842 GGCGTCATTGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCATT 23911783 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| ||| ||| | || | ||| | || | | | |||||| | Sbjct 23911782 GCCTATGGCTTAGATAAAGC---AGGCCAGGGAGAGCGACATGTCCTGATCTTTGATCTG 23911726 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 |||||||| || |||| || | || | || || |||||| | ||||| || ||| Sbjct 23911725 GGTGGAGGCACATTTGATGTGTCCATCCTGACCATAGATGATGGGATTTTTGAGGTCAAG 23911666 Query 451562 GCAAC 451566 || || Sbjct 23911665 GCCAC 23911661 >seq1 Length=274330532 Score = 91.5 bits (100), Expect = 6e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 265933206 GTTACTCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 265933147 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 || || || ||| ||||||||| || ||||| | | || || ||||| || Sbjct 265933146 AAGGACGCTGGAACTATTGCTGGGTTGAATGTCATGAGGATCATCAATGAGCC 265933094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975702882584204