Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq7 288 1e-72 seq9 201 1e-46 seq4 178 2e-39 >seq7 Length=121844099 Score = 288 bits (318), Expect = 1e-72 Identities = 802/1216 (66%), Gaps = 26/1216 (2%) Strand=Plus/Plus Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCG 7003 || || || || || ||||| || | ||| ||||| | | |||||| || || ||| Sbjct 23911112 GTCTCCAGCCCCAGCGACAGCGGAGCCACATCCAACAAAAGCAGGTCCTGTACCTTTTCA 23911171 Query 7004 TTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCG 7063 | || ||| | | |||||| || || || | |||||||| || |||||||||||| Sbjct 23911172 GACTTATCCCCCATCAGGATGGCTGCCTGTACTGCAGCCCCGTAGGCCACCGCCTCATCG 23911231 Query 7064 GGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG---ATAACATTTGTTGA 7120 ||||| || | || || || || || ||||| || ||| ||||| | || Sbjct 23911232 GGGTTGATACTCTTGTTGAGATCACGGCCATTAAAGTAGTCCTGCAATAACCTCTGC--- 23911288 Query 7121 ATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCG 7180 | || ||||| || || || || || || || || || || | | ||| | ||||| Sbjct 23911289 ACCTTAGGGATGCGGGTGGAGCCCCCTACTAAGACAATGTCGTGGATTTTAGCCTTATCC 23911348 Query 7181 ATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTTACGGAACAAGTCC 7237 ||||| | || ||||| | || || || || |||| | | || |||| ||| Sbjct 23911349 ATCTTGGCATCCCGAAGAGCCTTCTCCACCGGCTCCAGGGTGCCCCTA---AACAGGTCT 23911405 Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297 ||||| || ||||| || || | ||| |||||||| |||||||| | ||| ||||| Sbjct 23911406 GCGCACAGCTCTTCAAACCGGGCTCTGGTGATGGATGTGTAGAAATCGATGCCTTCGTAA 23911465 Query 7298 AACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357 | |||||||||||| | | | | || | | || || | || | ||| || ||||| Sbjct 23911466 AGCGAATCAATTTCCAAGTTGGCCTGCGTGCTGGACGACAGGGTCCTCTTGGCCCGCTCG 23911525 Query 7358 CACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTA 7417 || ||||| || | || | | || ||| ||| | || || ||||| || || Sbjct 23911526 CAGGCCGTGCGCAGCCGCCTCACCGCCCGCTTGTTCTGGCTGATGTCCTTCTTGTGCTTC 23911585 Query 7418 CGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 | || ||||| || |||||| | | || || ||||| || || || |||||| Sbjct 23911586 CTCTTGAACTCCTCCACGAAGTGGCTCACCAGCCTGTTGTCGAAGTCCTCGCCGCCCAAG 23911645 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || ||||| || || || ||||| ||||| || || | || ||| | | | || Sbjct 23911646 TGGGTGTCCCCAGCTGTGGCCTTGACCTCAAAAATCCCATCATCTATGGTCAGGATGGAC 23911705 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT-TCG-TATCGTCGTCTTTGT 7595 |||||||| || || |||||||| ||||| || || || | ||| | || | | | | Sbjct 23911706 ACATCAAATGTGCCTCCACCCAGATCAAAGATCAGGACATGTCGCTCTCCCTGGCCTGCT 23911765 Query 7596 TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAG 7654 ||||| | || || || || || || || || |||||||| ||||| | || ||| Sbjct 23911766 --TTATCTAAGCCATAGGCAATGGCAGCAGCTGTGGGTTCATTGATAATTCTTAGCACA- 23911822 Query 7655 TTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || || ||||| | ||| ||||| || || || || ||||| || || || || || Sbjct 23911823 TTGAGACCTGCAAT-GACGCCTGCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAATA 23911881 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 ||| || || || | || || | ||||| | | || | | | | || || | || Sbjct 23911882 GGCTGGCACAGTGATCACAGCATTGGTGACAGTGTAGCCCAAAAAAGCCTCAGCAGTCTC 23911941 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833 ||||| ||||| || ||||| || || || || |||| || ||| | || || Sbjct 23911942 CTTCATCTTGGTCAGTACCATAGAAGAGATTTCCTCAGGGTAGAAGGCTTTTTTCTCCCC 23912001 Query 7834 GTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCA 7893 || | ||| | | |||| || || | | | || || | | | | ||| Sbjct 23912002 TTTGTAGGAAACCATTACCTTGGGCTT-GCCTC--CTTCATTAATTACTTGAAAAGGCCA 23912058 Query 7894 ATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGC 7953 | |||||||||| ||| || | || ||| || || || || ||||| || || Sbjct 23912059 AAGTTTCATATCGGATTGCACTACAGGATCATTAAATTTCCTGCCAATCAGACGTTTGGC 23912118 Query 7954 ATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAG 8013 |||||| || ||||| | ||| |||||||| |||||||| ||||| || ||||| || Sbjct 23912119 ATCAAAGACAGTGTTCTGGGGATTCATGGCCACCTGGTTCTTGGCCGCATCGCCGATGAG 23912178 Query 8014 ACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTT 8073 || || | ||||| || || ||||| ||||| || || || || |||||||| Sbjct 23912179 CCGCTC---GGTGTCCGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTT 23912235 Query 8074 CGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAA 8133 || || || || || | ||| || | || || |||||||| ||||| || || | Sbjct 23912236 GGCGATGATCTCCACCTTGCCGTGCTGGAACACCCCCACGCACGAGTACGTGGTGCCCAG 23912295 Query 8134 ATCAATACCGATTGCT 8149 || || ||||| ||| Sbjct 23912296 GTCGATGCCGATGGCT 23912311 Score = 286 bits (316), Expect = 4e-72 Identities = 798/1214 (66%), Gaps = 24/1214 (2%) Strand=Plus/Minus Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCG 7003 || || || || || ||||| || | |||||||| || | |||||| || || ||| Sbjct 23916285 GTCTCCAGCCCCAGCGACAGCGGGGCCACGTCCAGCAGCAGCAGGTCCTGCACG--TTC- 23916229 Query 7004 TTCC--CTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTC 7059 ||| ||| | ||| | | |||||| || || |||| |||||| || || |||||||| Sbjct 23916228 -TCCGACTTGTCGCCCATCAGGATGGCCGCCTGCACCGCCGCCCCATACGCCACCGCCTC 23916170 Query 7060 ATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTG 7119 || ||||| || | || || || || ||||| || | ||| | || | || Sbjct 23916169 GTCCGGGTTGATGCTCTTGTTGAGGTCGCGCCCGTTGAAGAAGTCCTGCAGCAGCTTCTG 23916110 Query 7120 AATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATC 7179 | || ||||| || ||||| || || |||| || | || | | | | || || Sbjct 23916109 CACCTTGGGGATGCGCGTCGAGCCCCCCACCAGCACCAGGTCGTGGATCTGGGCCTTGTC 23916050 Query 7180 GATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCAT 7239 | ||| | ||| || || | || || || || |||| | ||||||| |||| Sbjct 23916049 CAGCTTCGCGTCGCGCAGAGCCTTCTCCACCGGCTCCAGGGTGCTGCGGAACAGGTCCGA 23915990 Query 7240 ACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAA 7299 ||||| ||||| || || || ||||| ||||| || ||||| || | ||| ||| | | Sbjct 23915989 GCACAGCTCCTCGAAGCGCGCCCGGGTGATGGACGTGTAGAAGTCGATGCCCTCGAACAG 23915930 Query 7300 CGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACA 7359 || || || || | | | | || | | || || | || | ||| || ||||| || Sbjct 23915929 GGAGTCGATCTCCAGGCTGGCCTGCGTGCTGGACGACAGGGTCCTCTTGGCCCGCTCGCA 23915870 Query 7360 CGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACG 7419 |||||||| | || | | || ||| ||| | || || ||||| || || | Sbjct 23915869 GGCCGTTCGCAGCCGCCTCACCGCCCGCTTGTTCTGGCTGATGTCCTTCTTGTGCTTCCT 23915810 Query 7420 TTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTG 7479 || ||||| || |||||| | || || ||||| || || || |||| ||| Sbjct 23915809 CTTGAACTCCTCCACGAAGTGGTTCACCAGCCTGTTGTCGAAGTCCTCGCCGCCCAGGTG 23915750 Query 7480 TGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAAC 7539 || |||||||| || || || || || ||||| || | || || | | | || || Sbjct 23915749 CGTGTCCCCCGCCGTGGCCTTCACCTCGAAGATGCCGTCGTCGATCGTCAGGATGGACAC 23915690 Query 7540 ATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTGT--- 7595 || ||||| || || |||||||| || || || ||||| || || | ||| Sbjct 23915689 GTCGAACGTGCCCCCGCCCAGGTCGAAGATCAGCACGTTG----CGCTCCCCCTTGCCCG 23915634 Query 7596 TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGT 7655 || | || || ||||| ||||| ||||||||||| || || || || || || || || Sbjct 23915633 TCCTGTCCAGGCCGTAGGCGATGGCCGCCGCCGTGGGCTCGTTGATGATCCGCAGCACGT 23915574 Query 7656 TCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGG 7715 |||| || || || ||||||| || || || || || ||||| ||||| ||||||| Sbjct 23915573 TCAGCCCCGCGATCACCCCCGCATCCTTGGTGGCCTGCCGCTGCGAGTCGTTGAAGTAGG 23915514 Query 7716 CCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTT 7775 |||| ||||| | ||||||| | || | || || |||| || ||||| || | Sbjct 23915513 CCGGCACCGTGATCACCGCGTTGCTCACCGGGTGGCCCAGGTACGCCTCGGCGATCTCCT 23915454 Query 7776 TCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGT 7835 |||| ||||| || |||||||| || ||||| || | ||| || || || || | Sbjct 23915453 TCATCTTGGTCAGCACCATCGACGAGATCTCCTCCGGGTAGAACGCCTTGGTCTCGCCCT 23915394 Query 7836 T-AAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAA 7894 | | ||| || | | | |||| || ||| | || ||| ||| | | ||| Sbjct 23915393 TGTAGCTCACCTGC-ACCTTGGGCTTGTCC---CCGTCGTTGATCACCCGGAAGGGCCAG 23915338 Query 7895 TCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCA 7954 | ||||| || | || ||| |||| ||||| | ||||| || ||||| || Sbjct 23915337 TGCTTCATGTCCGCCTGCACCACCGGGTCGCCGAACTTGCGCCCGATCAGCCGCTTCGCG 23915278 Query 7955 TCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGA 8014 ||||| || ||||| | ||||||| || |||||||| ||||| || ||||| || Sbjct 23915277 TCAAACACCGTGTTCTGCGGGTTCAGCGCCACCTGGTTCTTGGCCGCATCGCCGATCAGC 23915218 Query 8015 CGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTC 8074 || || | ||||| || || ||||| ||||| || || || || |||||||| Sbjct 23915217 CGCTC---GGTGTCCGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTTG 23915161 Query 8075 GCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAA 8134 || || || || || | ||| || | || || |||||||| ||||| || || | Sbjct 23915160 GCGATGATCTCCACCTTGCCGTGCTGGAACACCCCCACGCACGAGTACGTGGTGCCCAGG 23915101 Query 8135 TCAATACCGATTGC 8148 || || ||||| || Sbjct 23915100 TCGATGCCGATGGC 23915087 Score = 282 bits (312), Expect = 5e-71 Identities = 797/1214 (66%), Gaps = 24/1214 (2%) Strand=Plus/Minus Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCG 7003 || || || || || ||||| || | |||||||| || | |||||| || || ||| Sbjct 23927142 GTCTCCAGCCCCAGCGACAGCGGGGCCACGTCCAGCAGCAGCAGGTCCTGCACG--TTC- 23927086 Query 7004 TTCC--CTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTC 7059 ||| ||| | ||| | | |||||| || || |||| |||||| || || |||||||| Sbjct 23927085 -TCCGACTTGTCGCCCATCAGGATGGCCGCCTGCACCGCCGCCCCATACGCCACCGCCTC 23927027 Query 7060 ATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTG 7119 || ||||| || | || || || || ||||| || | ||| | || | || Sbjct 23927026 GTCCGGGTTGATGCTCTTGTTGAGGTCGCGCCCGTTGAAGAAGTCCTGCAGCAGCTTCTG 23926967 Query 7120 AATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATC 7179 | || ||||| || ||||| || || |||| || | || | | | | || || Sbjct 23926966 CACCTTGGGGATGCGCGTCGAGCCCCCCACCAGCACCAGGTCGTGGATCTGGGCCTTGTC 23926907 Query 7180 GATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCAT 7239 | ||| | ||| || || | || || || || |||| | ||||||| |||| Sbjct 23926906 CAGCTTCGCGTCGCGCAGAGCCTTCTCCACCGGCTCCAGGGTGCTGCGGAACAGGTCCGA 23926847 Query 7240 ACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAA 7299 ||||| ||||| || || || ||||| ||||| || ||||| || | ||| ||| | | Sbjct 23926846 GCACAGCTCCTCGAAGCGCGCCCGGGTGATGGACGTGTAGAAGTCGATGCCCTCGAACAG 23926787 Query 7300 CGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACA 7359 || || || || | | | | || | | || || | || | ||| || ||||| || Sbjct 23926786 GGAGTCGATCTCCAGGCTGGCCTGCGTGCTGGACGACAGGGTCCTCTTGGCCCGCTCGCA 23926727 Query 7360 CGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACG 7419 ||||| || | || | | || ||| ||| | || || ||||| || || | Sbjct 23926726 GGCCGTGCGCAGCCGCCTCACCGCCCGCTTGTTCTGGCTGATGTCCTTCTTGTGCTTCCT 23926667 Query 7420 TTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTG 7479 || ||||| || |||||| | || || ||||| || || || |||| ||| Sbjct 23926666 CTTGAACTCCTCCACGAAGTGGTTCACCAGCCTGTTGTCGAAGTCCTCGCCGCCCAGGTG 23926607 Query 7480 TGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAAC 7539 || |||||||| || || || || || ||||| || | || || | | | || || Sbjct 23926606 CGTGTCCCCCGCCGTGGCCTTCACCTCGAAGATGCCGTCGTCGATCGTCAGGATGGACAC 23926547 Query 7540 ATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTGT--- 7595 || ||||| || || |||||||| || || || ||||| || || | ||| Sbjct 23926546 GTCGAACGTGCCCCCGCCCAGGTCGAAGATCAGCACGTTG----CGCTCCCCCTTGCCCG 23926491 Query 7596 TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGT 7655 || | || || ||||| ||||| ||||||||||| || || || || || || || || Sbjct 23926490 TCCTGTCCAGGCCGTAGGCGATGGCCGCCGCCGTGGGCTCGTTGATGATCCGCAGCACGT 23926431 Query 7656 TCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGG 7715 |||| || || || ||||||| || || || || || ||||| ||||| ||||||| Sbjct 23926430 TCAGCCCCGCGATCACCCCCGCATCCTTGGTGGCCTGCCGCTGCGAGTCGTTGAAGTAGG 23926371 Query 7716 CCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTT 7775 |||| ||||| | ||||||| | || | || || |||| || ||||| || | Sbjct 23926370 CCGGCACCGTGATCACCGCGTTGCTCACCGGGTGGCCCAGGTACGCCTCGGCGATCTCCT 23926311 Query 7776 TCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGT 7835 |||| ||||| || |||||||| || ||||| || | ||| || || || || | Sbjct 23926310 TCATCTTGGTCAGCACCATCGACGAGATCTCCTCCGGGTAGAACGCCTTGGTCTCGCCCT 23926251 Query 7836 T-AAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAA 7894 | | ||| || | | | |||| || ||| | || ||| ||| | | ||| Sbjct 23926250 TGTAGCTCACCTGC-ACCTTGGGCTTGTCC---CCGTCGTTGATCACCCGGAAGGGCCAG 23926195 Query 7895 TCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCA 7954 | ||||| || | || ||| |||| ||||| | ||||| || ||||| || Sbjct 23926194 TGCTTCATGTCCGCCTGCACCACCGGGTCGCCGAACTTGCGCCCGATCAGCCGCTTCGCG 23926135 Query 7955 TCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGA 8014 ||||| || ||||| | ||||||| || |||||||| ||||| || ||||| || Sbjct 23926134 TCAAACACCGTGTTCTGCGGGTTCAGCGCCACCTGGTTCTTGGCCGCATCGCCGATCAGC 23926075 Query 8015 CGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTC 8074 || || | ||||| || || ||||| ||||| || || || || |||||||| Sbjct 23926074 CGCTC---GGTGTCCGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTTG 23926018 Query 8075 GCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAA 8134 || || || || || | ||| || | || || |||||||| ||||| || || | Sbjct 23926017 GCGATGATCTCCACCTTGCCGTGCTGGAACACCCCCACGCACGAGTACGTGGTGCCCAGG 23925958 Query 8135 TCAATACCGATTGC 8148 || || ||||| || Sbjct 23925957 TCGATGCCGATGGC 23925944 Score = 259 bits (286), Expect = 6e-64 Identities = 793/1214 (65%), Gaps = 19/1214 (2%) Strand=Plus/Minus Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCG 7003 || |||| || || || || || |||||||| | || | |||||| || || ||| Sbjct 88608776 GTCTCGATGCCCAGCGAGAGCGGGGTCACGTCGAGTAGCAGCAGGTCCTGCACGTTCTCG 88608717 Query 7004 TTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCG 7063 | || || | | ||| || || || || | || ||||| || |||||||| || Sbjct 88608716 GACTTGTCCCCGATCAGGATCGCTGCCTGCACAGCGGCTCCGTAGGCCACCGCCTCGTCA 88608657 Query 7064 GGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATT 7123 ||||| || | || ||||| || || ||||| || ||||| | || | || || Sbjct 88608656 GGGTTGATGCTCTTGTTCAGCTCCTTGCCGTTGAAGAAATCCTGCAGCAGCTTCTGGATC 88608597 Query 7124 TTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATC 7183 || ||||| || || || || || |||| ||||| || | | | || || | | Sbjct 88608596 TTGGGGATGCGAGTGGAGCCGCCCACCAGCACGATCTCCTGGATCTGGCCCTTGTCCAGC 88608537 Query 7184 TTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACAC 7243 || | ||| || || | || || || || || | || |||| ||| Sbjct 88608536 TTGGCGTCGCGCAGCGCCTTCTCCACCGGCTCGAGGGTCCCGCGAAACAGGTCTGCGTTG 88608477 Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || |||||||| || || ||||| ||||| || ||||| || ||||| ||||| | ||| Sbjct 88608476 AGCTCCTCAAAGCGGGCCCGGGTGATGGACGTGTAGAAGTCCACGCCCTCGTAGAGCGAG 88608417 Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363 || || || ||| | | |||| | ||| | || ||||| |||||||| || || Sbjct 88608416 TCGATCTCGATGCTCGCCTGTGTGGACGAGCTCAGGGTGCGCTTAGCGCGCTCGCAGGCG 88608357 Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTA 7423 || || | || || | || ||| ||| ||| || ||||| || || ||||| Sbjct 88608356 GTGCGGAGTCGCCGCACCGCGCGCTTGTTGGGCCCAATGTCCTTCTTGTGCTTGCGTTTG 88608297 Query 7424 AACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 ||||| || | ||||| | | | | |||||| || || || |||| ||| || Sbjct 88608296 AACTCCTCGGCCAAGTGGCTCACCATGCGGTTATCGAAGTCCTCGCCGCCCAGGTGGGTG 88608237 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || || || | || || || ||||| || | || ||| | | | || || || Sbjct 88608236 TCGCCAGCCGTGGACTTCACCTCGAAGATGCCGTCCTCGATGGTCAGGATGGACACGTCG 88608177 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG------TTC 7597 || || || || |||||||| |||||||| |||||| | ||| || | | ||| Sbjct 88608176 AAAGTGCCGCCGCCCAGGTCGAAAATGAGCACGTTCTTCTCGCCGCCCGCGCAGCCCTTC 88608117 Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTT 7656 || || || ||||| ||||| || ||||| || || || || || || || || ||| || Sbjct 88608116 TTGTCCAGGCCGTAGGCGATGGCTGCCGCTGT-GGCTCGTTGATGATGCGCAGCACA-TT 88608059 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 ||||| | || || |||| || || || || || || || || || || || ||||| Sbjct 88608058 AAGGCCCGTGATGGTGCCCGCGTCCTTGGTGGCCTGGCGCTGAGAGTCATTGAAATAGGC 88607999 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776 ||||| || | ||||||| | || || || || || | ||| ||||| || || Sbjct 88607998 GGGGACGGTGATGACCGCGCTCTGCACCTTGCCCCCCAGGTAGGCTTCGGCGATCTCCTT 88607939 Query 7777 CATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTT-TCACCGT 7835 ||| || || || ||||| || || ||||| || | | | | || | | | || || | Sbjct 88607938 CATCTTAGTGAGGACCATGGAAGAGATCTCCTCCGG-GAAGAAGGTCTTGATCTCTCCCT 88607880 Query 7836 TAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAAT 7895 | | || || | | |||| || || | | || | ||| | | ||| | Sbjct 88607879 TGTACTCCACCTGCACTTTGGGCTTC-CCTC--CCTCGCTCACCACCCGGAATGGCCAGT 88607823 Query 7896 CTTTCATATCGTCTTGGACCTGTTG-GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCA 7954 |||||| || ||| || ||| | |||| ||||| | |||||| || | ||| || Sbjct 88607822 GTTTCATGTCCGATTGCAC-TGTGGCGTCCTCGAACTTCCGTCCGATCAGCCTCTTGGCG 88607764 Query 7955 TCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGA 8014 || || | ||||| ||||||||||||| |||||||| || ||||| ||||| || Sbjct 88607763 TCGAAGATGGTGTTCGTGGGGTTCATGGCCACCTGGTTCTTGGCGGCGTCGCCGATGAGG 88607704 Query 8015 CGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTC 8074 || || | || || || || ||||| ||||| || || || || |||||||| Sbjct 88607703 CGCTC---GGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTTG 88607647 Query 8075 GCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAA 8134 || || || || || | | | ||| |||| || |||||||| || || || || | Sbjct 88607646 GCGATGATCTCCACCTTGCCATGTTGGAAGACCCCCACGCACGAGTAGGTAGTGCCCAGG 88607587 Query 8135 TCAATACCGATTGC 8148 || || ||||| || Sbjct 88607586 TCGATGCCGATAGC 88607573 >seq9 Length=139512083 Score = 201 bits (222), Expect = 1e-46 Identities = 368/539 (68%), Gaps = 0/539 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || |||||||||||||| || | |||||||||||||| ||||| || Sbjct 49984246 GCACCATAAGCAACAGCCTCATCGGGGTTGATGCTCTTATTCAGTTCTTTCCCGTTGAAG 49984305 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | | | || || || ||||| || || || ||||| |||| || || Sbjct 49984306 AAGTCCTGCAGAAGCTTCTGGATCTTGGGGATACGGGTTGAGCCACCCACCAGGACAATG 49984365 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | || || || | ||| | || ||||| | ||| || ||||| |||| Sbjct 49984366 TCATGGATCTGAGACTTGTCTAGCTTGGCATCCCGAAGGGCTTTCTCCACAGGATCCAGG 49984425 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| | || ||| ||||| || ||||| ||||| || |||||| Sbjct 49984426 GTGCCACGGAACAGGTCAGCATTCAATTCTTCAAATCGGGCACGAGTAATAGAGGTATAG 49984485 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || | || || || | |||||||| ||||| | | || | | ||||| | Sbjct 49984486 AAGTCGATTCCTTCATAGAGGGAATCAATCTCAATACTGGCCTGAGTGCTGGAAGAGAGA 49984545 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || |||||||| || || || | ||||| | || | | ||| || Sbjct 49984546 GTGCGCTTAGCACGCTCACAAGCAGTACGGAGGCGACGGACAGCCCTCTTGTTCTCGCTG 49984605 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || || || |||||| || || || | | ||| || Sbjct 49984606 ATGTCCTTCTTGTGCTTGCGCTTGAACTCTGCAATAAAATGGTTGACCATTCTATTGTCA 49984665 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||||||| ||||| || || || | |||||| || |||||||| | Sbjct 49984666 AAGTCCTCTCCACCCAAGTGGGTATCTCCAGCTGTAGATTTGACCTCGAAGATACCATCC 49984725 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 ||||| | | | || |||||||| || |||||||||| ||| || || || ||||| Sbjct 49984726 TCAATAGTGAGGATTGACACATCAAAAGTGCCACCACCCAAGTCGAAGATCAGCACGTT 49984784 Score = 100 bits (110), Expect = 4e-16 Identities = 140/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 7953 CATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAA 8012 || ||||||| ||||| |||| ||||| || |||||||||||| || || || || | Sbjct 49985749 CACCAAAAACCGTGTTGGTGGGATTCATCGCAACTTGGTTCTTCGCAGCATCACCAATCA 49985808 Query 8013 GACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGT 8072 |||||| || || ||||| || || || |||||| ||||| ||||| || || | Sbjct 49985809 ATCGTTCAGTA---TCAGTAAAGGCAACATAGCTTGGGGTGGTTCGGTTCCCCTGATCAT 49985865 Query 8073 TCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTA 8132 | ||||| ||||| || ||| || |||| || || || ||||| || || || | Sbjct 49985866 TAGCAATTATTTCCACTTTTCCGTGCTGGAAGACACCCACACAAGAATAGGTGGTGCCAA 49985925 Query 8133 AATCAATACCGATTGC 8148 |||||| || | ||| Sbjct 49985926 GATCAATGCCAACTGC 49985941 Score = 86.0 bits (94), Expect = 8e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGC 7665 || || || ||||| || || ||||| ||||| || || | ||| ||| || || ||||| Sbjct 49984900 CCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA-TTGAGACCAGC 49984958 Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 ||||||| | |||||||| || || || || || || ||||||||||| || || || || Sbjct 49984959 AATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCGTTAAAGTATGCTGGTACTGT 49985018 Query 7726 TACGACCGC 7734 || || || Sbjct 49985019 GACAACAGC 49985027 >seq4 Length=130910915 Score = 178 bits (196), Expect = 2e-39 Identities = 590/916 (64%), Gaps = 4/916 (0%) Strand=Plus/Plus Query 6896 GGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCA 6955 || || || | ||| ||| | || | || |||||| | || || || || || || Sbjct 88971737 GGGATGGTGGCATTCCTCTGGATCAGCGTGGTCATCACCCCCCCGGCTGTCTCCAGCCCC 88971796 Query 6956 AGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTT--CAC 7013 || ||||| || | ||| |||| || | || || || || ||| | ||| | | Sbjct 88971797 AGGGACAGGGGAGCCACATCCAGCAGCAGGAGATCCTGCACC--TTCTCACACTTGTCCC 88971854 Query 7014 CCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCG 7073 || | || | || || || || | || || || || || |||||||| ||||| || Sbjct 88971855 CCATCAACACTGCTGCCTGCACAGCAGCACCATAGGCCACAGCCTCATCTGGGTTTATGC 88971914 Query 7074 TTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTC 7133 | || |||||||| || || || | ||| | | | || || || ||||| | Sbjct 88971915 TCTTGTTCAGTTCCCGGCCATTGAAGAAGTCCTGCAGAAGCTTCTGTATCTTGGGGATGC 88971974 Query 7134 GTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTC 7193 | || || ||||| || | || || |||| | | | || || | ||| | || | Sbjct 88971975 GGGTAGAGCCACCCACTAGGACAATATCATGGATCTGAGCCTTGTCCAGCTTGGCATCCC 88972034 Query 7194 GAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAA 7253 | || | ||| || || || |||| | ||||| | ||| |||||||| |||| Sbjct 88972035 GCAGGGCTTTCTCCACTGGCTCCAGGGTGCTGCGGAAGAGGTCTGAGCACAGTTCTTCAA 88972094 Query 7254 AACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAA 7313 | || || || || || || || ||||| || || || || | | || || ||||| | Sbjct 88972095 AGCGGGCTCGAGTGATAGAAGTGTAGAAGTCTACACCCTCAAAGAGGGAGTCGATTTCCA 88972154 Query 7314 TGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAAC 7373 || | || | | ||||| | || || || ||||||||||| || || || | | Sbjct 88972155 GCGTGGCCTGGGTGCTGGAAGACAGGGTGCGTTTGGCGCGCTCACAGGCGGTGCGGAGCC 88972214 Query 7374 GACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAG 7433 || ||||| || ||| | | || ||| | || || ||| |||||| || Sbjct 88972215 TGCGCAGGGCCCGTTTGTTCGTGCTTAAGTCCTTCCTGTGCTTCCGTCGAAACTCCTCCA 88972274 Query 7434 AGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGG 7493 |||||| | | | ||||| || || ||||||| ||| || || || || | Sbjct 88972275 TGAAGTGGTTCACCAAACGGTTGTCGAAGTCCTCTCCACCCAGGTGAGTGTCTCCAGCCG 88972334 Query 7494 TCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCAC 7553 | || || || ||||||| |||| | ||||| | | | ||| || || || || || | Sbjct 88972335 TGGCCTTCACCTCAAAGACACCTGCGTCAATAGTAAGGACCGACACGTCGAAGGTTCCTC 88972394 Query 7554 CACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACG 7613 |||||| ||| |||||||| |||||| || | | || || || || || | Sbjct 88972395 CACCCAAGTCGAAAATGAGCACGTTCCGCTCACCAGCGCCCCTCCGGTCCAGGCCATAGG 88972454 Query 7614 CGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG 7673 |||| || || || || || |||||||| || | || ||| || || ||||| | Sbjct 88972455 CGATGGCAGCAGCTGTGGGCTCATTAATGATCCTCAGCACGTTGAGCCCTGCAATGGCAC 88972514 Query 7674 CCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCG 7733 | || || || || || || || || || ||||| |||||||| || || || | || | Sbjct 88972515 CTGCGTCCTTGGTGGCCTGACGCTGAGAGTCGTTGAAGTAGGCAGGCACGGTGATCACAG 88972574 Query 7734 CGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCA 7793 ||| | | || || || || |||| ||||| | || ||||| ||| | || |||| Sbjct 88972575 CGTGCCTCACGGGCTGGCCCAGGTACGCCTCCGCAGTCTCCTTCATCTTGCTCAGCACCA 88972634 Query 7794 TCGATGAAATCTCTTC 7809 | || |||||||| || Sbjct 88972635 TGGACGAAATCTCCTC 88972650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635127933294920