Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq14 152 1e-31 seq12 149 1e-30 seq1 102 2e-16 seq7 95.1 3e-14 seq10 84.2 5e-11 >seq14 Length=141755446 Score = 152 bits (168), Expect = 1e-31 Identities = 170/226 (75%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| || |||||||| || || || ||||| || | || || Sbjct 28258182 TCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 28258123 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || |||||||| || ||||| Sbjct 28258122 GCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 28258063 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||| |||||||| || |||||| |||||||||||||| ||| |||||||| Sbjct 28258062 CTCTTTTTCTTGAATCTTCCCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACTTC 28258006 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||||| || ||||| || ||||| || | |||||| Sbjct 28258005 CAGGGTGATGGTCTTACCAGTCAAGGTCTTTACAAAGATCTGCATT 28257960 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| || |||||||| || || || ||||| || | || || Sbjct 28259778 TCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 28259719 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || |||||||| || ||||| Sbjct 28259718 GCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 28259659 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || |||||||||||| |||||||| |||||||| || Sbjct 28259658 TTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAG 28259599 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || ||||| || || ||||| | ||||| Sbjct 28259598 GGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28259557 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| || |||||||| || || || ||||| || | || || Sbjct 28260234 TCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 28260175 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || |||||||| || ||||| Sbjct 28260174 GCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 28260115 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || |||||||||||| |||||||| |||||||| || Sbjct 28260114 TTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAG 28260055 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || ||||| || || ||||| | ||||| Sbjct 28260054 GGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28260013 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| || |||||||| || || || ||||| || | || || Sbjct 28258410 TCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 28258351 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || |||||||| || ||||| Sbjct 28258350 GCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 28258291 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || |||||||||||| |||||||| |||||||| || Sbjct 28258290 TTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAG 28258231 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || ||||| || || ||||| | ||||| Sbjct 28258230 GGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28258189 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| || |||||||| || || || ||||| || | || || Sbjct 28258866 TCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 28258807 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || |||||||| || ||||| Sbjct 28258806 GCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 28258747 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || |||||||||||| |||||||| |||||||| || Sbjct 28258746 TTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAG 28258687 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || ||||| || || ||||| | ||||| Sbjct 28258686 GGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28258645 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| || |||||||| || || || ||||| || | || || Sbjct 28259550 TCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 28259491 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || |||||||| || ||||| Sbjct 28259490 GCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 28259431 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || |||||||||||| |||||||| |||||||| || Sbjct 28259430 TTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAG 28259371 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || ||||| || || ||||| | ||||| Sbjct 28259370 GGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28259329 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| || |||||||| || || || ||||| || | || || Sbjct 28260006 TCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 28259947 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || |||||||| || ||||| Sbjct 28259946 GCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 28259887 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || |||||||||||| |||||||| |||||||| || Sbjct 28259886 TTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAG 28259827 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || ||||| || || ||||| | ||||| Sbjct 28259826 GGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28259785 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| || |||||||| || || || ||||| || | || || Sbjct 28259322 TCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 28259263 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || |||||||| || ||||| Sbjct 28259262 GCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 28259203 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || |||||||||||| |||||||| |||||||| || Sbjct 28259202 TTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAG 28259143 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || ||||| || || || || | ||||| Sbjct 28259142 GGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 28259101 >seq12 Length=61602749 Score = 149 bits (164), Expect = 1e-30 Identities = 168/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 || || | || ||| || || |||||||||||||| || || |||||||| | |||||| Sbjct 59171646 CTCAGACGCAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTG 59171705 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| ||||| ||||| || | || ||||| || ||||||||| Sbjct 59171706 CGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCT 59171765 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || || || || || || ||| || ||||| |||||||| ||| ||||| || Sbjct 59171766 TCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTCC 59171822 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 59171823 AGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 59171866 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||||||||||| || || |||||||| | |||||| | |||||||| Sbjct 59171430 ACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 59171489 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || ||||||||||| || || || Sbjct 59171490 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 59171549 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 59171550 ATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 59171606 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || ||||| | ||||| Sbjct 59171607 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 59171638 Score = 134 bits (148), Expect = 3e-26 Identities = 166/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 || || | || ||| || || || ||||||||||| || || |||||||| | |||||| Sbjct 59171874 CTCAGACGCAGAACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTG 59171933 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || |||||||| ||||| ||||| || | || ||||| || |||||||| Sbjct 59171934 CGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCC 59171993 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || || || || || || ||| || ||||| |||||||| ||| ||||| || Sbjct 59171994 TCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTCC 59172050 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| | ||||| || |||| || || ||||| | ||||||| Sbjct 59172051 AGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTT 59172096 >seq1 Length=274330532 Score = 102 bits (112), Expect = 2e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 |||| |||||||||||||| |||||||| ||||| || | | ||| | |||||||| | Sbjct 255801323 CAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCA 255801382 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 | ||||| || || |||| |||| ||| ||||| |||||||| ||||| || || || | Sbjct 255801383 GTTGCTTGCCAGCAGAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGA 255801442 Query 195053 TTTT 195056 | || Sbjct 255801443 TCTT 255801446 >seq7 Length=121844099 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||| | |||||| | | ||| || | ||| Sbjct 52639597 AGTCTCAATACAAGATGAAGAGTGGACACCTTTTGAGTGTCGTAGTC----AAAGTAGGT 52639542 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||| | |||| ||| ||||| || ||||| ||| Sbjct 52639541 CCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGGTCAGGCGGAATTCCTATC 52639482 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || | || || || ||| || || || || Sbjct 52639481 TTATCCTGGATCTTAGCCTTTACATTTTCTAATGTATCTGAGGGTTCAACCTCGAGAGTG 52639422 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||||| || || || || | ||||| Sbjct 52639421 ATGGTCTTGCCTGTCAGGGTCTTCACAAATATATGCAT 52639384 >seq10 Length=69359453 Score = 84.2 bits (92), Expect = 5e-11 Identities = 93/123 (76%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || ||||||||||| || || |||||||| | |||||| | ||||| || Sbjct 25807684 ACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCC 25807743 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGG-AATGCCTTCTTTGTCTTG 195050 ||| |||| ||||| ||||| || | || |||| || || ||||||||| || || || Sbjct 25807744 AGCGGCTTGCCTGCAAAGATGAGCCTCTGCCGGTCGGGGGGCAATGCCTTCCTTATCCTG 25807803 Query 195051 AAT 195053 || Sbjct 25807804 GAT 25807806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109472886062171