Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq15 338 7e-88 seq4 123 3e-23 seq3 111 2e-19 seq9 102 9e-17 >seq15 Length=140412725 Score = 338 bits (374), Expect = 7e-88 Identities = 648/943 (69%), Gaps = 33/943 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||||||||||||| || | | || ||| |||||||| Sbjct 19879760 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCCGACTCGA---CATCACTCCCAT 19879704 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || ||| |||| || || || || || | ||| ||| Sbjct 19879703 CCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCTTCCAGTGAAATATT 19879644 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||||| ||||| ||||||| ||| | | | || |||| || | || | Sbjct 19879643 CTCCATAAAGTCAAAGGGATTTTCTACTCTGAAAACCTTGCTGAAGCCCAGCTCCAGCCT 19879584 Query 18789 TAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTATTA 18847 ||||| || || || || | ||| || ||| ||||| | | |||||||| || | | Sbjct 19879583 GAGTCTGTCTGCCACGAACTCAATGTACTGT-TTCATTAAAGTGCAATTCATCCCAGTGA 19879525 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATA 18906 || || || || | ||| | | || || |||||||| | ||||| | |||| || Sbjct 19879524 GCTTCACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACTGCAT-TGATGATT 19879466 Query 18907 ATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCA 18966 || | ||||| | || ||| || ||| || |||| ||||||| || ||| Sbjct 19879465 ATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTGAACATCAGGCAGGCA 19879406 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 || || || |||| ||||| ||||| || || | || | |||||| Sbjct 19879405 AAGTCGCAGTGTAAACCCTCATCTCTGCTAAT--------------ACGTCAGGCCAGGC 19879360 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 |||||||||| ||| || | ||||||| | || ||||| || ||||||||||| || ||| Sbjct 19879359 ATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAAAAGAAAATTCCT 19879300 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146 || || || ||||| | | | | ||||||| ||| || || | ||||| Sbjct 19879299 TCCACGGCAGCAAAGGTGATGACACGTTCTCCACGTGGAGCCTCTTTGTCCCCCATCCAG 19879240 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | || ||||| || |||| ||| |||||||| ||||||||||| || | ||| | ||| Sbjct 19879239 TGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCGATGGCATTGA--AGA 19879182 Query 19207 TACATACGC--TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264 | || ||| || | | |||||| | || | ||| || | | || |||||||| | Sbjct 19879181 GAAATTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAGGAGGCTATACATTTCAG 19879122 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 |||| || ||||| || || || || || || || ||||| | |||||||| ||||| | Sbjct 19879121 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTCTGTAATCTGAA 19879062 Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384 ||| | ||| | || ||||| ||||||| || || |||||||| |||||||| | Sbjct 19879061 TTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCACTTGCTGCAAAGA 19879002 Query 19385 ATGCTAATA-CATGTTTAATAAAATGTTTTTCATCTGAGG-TTAAT-GTATTCCAATCAT 19441 | || || | |||| |||||||| | | || || ||| || || || | ||| | | Sbjct 19879001 AAGCCAAGATGATGTGAAATAAAATATCTCTC--CTTAGGCTTCATGGTTTCCCAGTGTT 19878944 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 ||| | || || | | || || ||| |||||||||| ||||||||||| || |||| Sbjct 19878943 GAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCTGCCTTCTTAT 19878884 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||| | ||| || ||| | |||| |||||||| || ||||| Sbjct 19878883 ACATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq4 Length=130910915 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| ||||| || | |||||||| || |||||||| | Sbjct 34847659 CCTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCT 34847600 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||||||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| | Sbjct 34847599 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 34847540 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||||| || Sbjct 34847539 CCACCACCCTTTCCCC 34847524 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || |||| Sbjct 34856218 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCC 34856159 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 34856158 ATAAAATCAAAGGGATTTT 34856140 >seq3 Length=132848913 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | ||| || ||||| || | |||||||||||||||| ||| | Sbjct 126360977 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCT 126361036 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| || || ||||| | Sbjct 126361037 TGAGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGG 126361096 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 126361097 CTACGACCCGTTCTCC 126361112 >seq9 Length=139512083 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || |||||||| || || ||||| || || Sbjct 6031380 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATATTACTGGTGTAAGGTTCAATGGAC 6031439 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| ||||| ||||| || || || |||||||| | ||| | | |||||| Sbjct 6031440 TCATTATTTCCCAAAATCTGAGCGGTGGAAGCAGTAGGCATCGGTGCGATAAGTAAGCTG 6031499 Query 47448 TTTCTTACTCCATA 47461 |||| || ||||| Sbjct 6031500 TTTCGTATGCCATA 6031513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104492841320