Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq9 136 3e-26 seq7 134 1e-25 seq1 96.9 3e-14 >seq9 Length=139512083 Score = 136 bits (150), Expect = 3e-26 Identities = 124/155 (80%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 550374 CTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGAC 550432 |||||||| || ||| ||||| |||| || | || ||||||||||| ||||| ||| Sbjct 49985054 CTTTTGTTTTTCTAGACTGTTACCAATGCTGTTGTCACAGTACCAGCATACTTTAACGAC 49984995 Query 550433 TCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATT 550492 || || ||||| ||||| |||||||||||| ||||||||| || ||||| ||| | || Sbjct 49984994 TCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATC 49984935 Query 550493 ATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||||||| || ||||||||||| |||| ||||| Sbjct 49984934 ATCAATGAGCCAACTGCTGCTGCTATTGCTTATGG 49984900 >seq7 Length=121844099 Score = 134 bits (148), Expect = 1e-25 Identities = 338/502 (67%), Gaps = 20/502 (4%) Strand=Plus/Minus Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || || || || || || ||||| || || || ||| | || || || || || | Sbjct 23912256 GGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCC 23912197 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAAT 550162 |||||||| || || | | | || ||||| || || | || | ||| || ||| Sbjct 23912196 TTCACGGACACCGAGCGGCTCATCGGCGATGCGGCCAAGAACCAGGTGGCCA-TG--AAT 23912140 Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222 || || ||| | |||||||| |||||| | ||||| || | ||||||||| | Sbjct 23912139 CCCCAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTA 23912080 Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA- 550281 || || | |||||||| | ||||||||| ||| | |||||| || || || | Sbjct 23912079 GTGCAATCCGATATGAAACTTTGGCCTTTTCAAGTAATTAATGAAGGAGGCAAGCCCAAG 23912020 Query 550282 -TATTGAAGCTACTCATGAAGGATCTGTTAAACAA---TTTTCACCAGAACAAATTTCAT 550337 || || | | | | |||| | ||| || || | || || |||| || | Sbjct 23912019 GTAATG--GTTTCCTACAAAGGG---GAGAAAAAAGCCTTCTACCCTGAGGAAATCTCTT 23911965 Query 550338 CTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACG 550396 ||||||| | | || ||||| | || || |||||| |||| | | | || || Sbjct 23911964 CTATGGTACTGACCAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCTACACTGTCACC 23911906 Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 |||| || || ||||| ||||| ||||| |||||||| ||||| || || || || ||| Sbjct 23911905 AATGCTGTGATCACTGTGCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGAT 23911846 Query 550457 GCTGGACGT-ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 || || ||| ||||| || || ||||| || | |||||||||||||| || |||||||| Sbjct 23911845 GCAGG-CGTCATTGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGC 23911787 Query 550516 ACTTGCATATGGACTTGATAAA 550537 |||| ||||| | |||||| Sbjct 23911786 CATTGCCTATGGCTTAGATAAA 23911765 >seq1 Length=274330532 Score = 96.9 bits (106), Expect = 3e-14 Identities = 113/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527 || ||||||||| | | || || |||||| |||| || |||||||||||||||||| Sbjct 265930942 ACAAAAGATAATCACCTTCTGGGAACTTTTGATTTGACTGGAATTCCTCCTGCTCCTCGT 265930883 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 ||||| ||||| |||||||| || || || || |||| ||||| ||| | |||||| Sbjct 265930882 GGAGTCCCGCAGATTGAAGTCACCTTTGAAATAGATGTGAATGGCATTCTTCGAGTGACT 265930823 Query 552588 GCTTGTGATAAATCTA---GCAACAAGAGTAA 552616 ||| || ||| || ||||||| | ||| Sbjct 265930822 GCTGAAGACAAAGGTACAGGCAACAAAAATAA 265930791 Score = 95.1 bits (104), Expect = 1e-13 Identities = 100/130 (77%), Gaps = 4/130 (3%) Strand=Plus/Plus Query 563263 AGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAAT 563320 ||| |||||||||| || ||| |||| ||| ||||| |||| | ||| | | || Sbjct 255801319 AGTGCAAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGTCCAT 255801376 Query 563321 CTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTAT 563380 |||| ||||| || || ||| | || ||||||||||| ||||||||||||||||| |||| Sbjct 255801377 CTTCCAGTTGCTTGCCAGCAGAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTAT 255801436 Query 563381 CTTGAATTTT 563390 | || || || Sbjct 255801437 CCTGGATCTT 255801446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029263581795370