Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_016447.1 Length=219474 Score E Sequences producing significant alignments: (Bits) Value seq4 84.2 3e-11 >seq4 Length=130910915 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/149 (73%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 197490 CATAATGGATAAAAGCTACCAGGGTCGTGTCAACA--TTAGCCAAACCAACTACTCTTTG 197547 ||| ||||| | |||||||||||| || | |||| || ||| | ||| |||| || Sbjct 89724748 CATTATGGACAGAAGCTACCAGGGCCGAATAAACATCTTCGCCCA--GAACAACTCCTTA 89724691 Query 197548 TGCATTAGGAACCTGACCGTGAATGATGCTGGTTCGTATAAGGCCCAAATTAACAAAAAT 197607 | || | || ||||| ||| ||||| || || ||||| |||||||| ||| |||| Sbjct 89724690 TCTATCAACAAGCTGACTTGGAAAGATGCAGGATCCTATAAAGCCCAAATAAACCAAAAG 89724631 Query 197608 AATTCCCAAGTCACCACCAAGGAGGAATT 197636 ||||| ||||||| | || |||||||| Sbjct 89724630 AATTCTGAAGTCACTATAAATGAGGAATT 89724602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 702183419478320