Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq4 154 2e-32 >seq4 Length=130910915 Score = 154 bits (170), Expect = 2e-32 Identities = 199/275 (72%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || ||||||||||| ||||| ||||| ||||| ||| || |||||||| ||||| Sbjct 89992608 GTTTCACAAACCAGCTCAACCCCACTGATTGTGAACGGGACCCTGGGGGAGTCAGTAACT 89992667 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||| | || || | | |||||||||| |||||||||||||| || | || Sbjct 89992668 CTACCCCTGAAGTTCCCTGAAGAAGAGAAGATCATGTCCATCACCTGGCTTCACGATGGA 89992727 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 | || ||| ||| || || |||| | || || | || ||| |||| || Sbjct 89992728 AAATCTATCATCTTCATACGGCCAAATAAGGCACAAAGTCCACTAATACACGTAACTGAT 89992787 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 || |||| | |||| ||| | ||| |||| |||||||||| || ||||| |||||||| Sbjct 89992788 CCAAAACAGAGCAATCGATTGAACGTCACCAAGTCCTACTCTCTGCAACTCAGCAACCTG 89992847 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGAT 2152 ||||| |||||| || || |||| |||| ||| Sbjct 89992848 ACGATGGCAGACACAGGATCTTACACCGCCCAGAT 89992882 Score = 134 bits (148), Expect = 2e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 2213 GAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGATCCATCT 2272 |||| ||||||| || || || | || |||| |||| || ||| | |||||| || Sbjct 89996224 GAACCTTCAGGTTGTCACTCTCACTGAAAGGTCTAGGAATGAGACCTGTGTGATCCACCT 89996283 Query 2273 GACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTTGGGCAA 2332 |||||| || || |||||||| ||||| ||| |||| |||| ||| ||| || || | Sbjct 89996284 GACCTGCTCCGTGGAGGATCCAAATGATAACGTCTCATTCAGCTGGCAGGTCTCAGGAAG 89996343 Query 2333 GACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAGTGAGCA 2392 | ||||| | | || | |||||||| |||||||||||||| ||| ||| || | Sbjct 89996344 CATGCTTCCAAGTGAAGCAAACCTCACTGTCTCCTGGGACCCCAAGAATTTCAGAGACGA 89996403 Query 2393 GAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTCGGCCCA 2452 || ||||| |||||| || || || |||| |||||| ||| | | | ||||| | ||| Sbjct 89996404 GACCTACATGTGCATAGCTGAGAATCCTGTCAGCAATGCCTCCTCCTCTGTCTCTGTCCA 89996463 Query 2453 GA 2454 || Sbjct 89996464 GA 89996465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629278378117480