Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq15 172 6e-38 seq4 107 2e-18 seq3 98.7 1e-15 >seq15 Length=140412725 Score = 172 bits (190), Expect = 6e-38 Identities = 403/603 (67%), Gaps = 25/603 (4%) Strand=Plus/Minus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||| || || |||||||| |||||||| || || Sbjct 19879424 TTTGAACATCAGGCAGGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAAT--------- 19879374 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 | || | || ||||| | |||| ||| || | ||| ||| | | ||||||||| Sbjct 19879373 -----ACGTCAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGA 19879319 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 |||||||||||||| ||||| || || ||||| | | | |||| || | || || Sbjct 19879318 ACCAGAAAAGAAAATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCC--ACGTGGA 19879261 Query 37343 ACTA--TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATT 37400 | | || ||||| | | ||| ||||||| || ||||| ||| Sbjct 19879260 GCCTCTTTGTCCCCCATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATT 19879201 Query 37401 GTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATT 37460 || || || || || |||||||| | |||||| |||| | || ||||||||||| Sbjct 19879200 GTCTCGATGGCATTGAAGAGAAATTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATG 19879141 Query 37461 AGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACAC 37520 || | |||||||||||||| || || ||||| || || || || || ||||| ||||| Sbjct 19879140 AGGAGGCTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAA 19879081 Query 37521 CTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTAT 37579 | |||||| | |||| |||| || | ||||| || | |||||||||| || || Sbjct 19879080 CGAGCTTCTG-TAATCTGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGAT 19879022 Query 37580 CCCATCACTAGCTGCAAAGAAAG-CAAGAACATATTTTATAAAATGTCTTTCATCA--TT 37636 |||||||| ||||||||||||| ||||| || | ||||||| ||| || | | | Sbjct 19879021 GCCATCACTTGCTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTAGGCT 19878962 Query 37637 TGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | || ||| ||| | | ||| | || || | | || || ||| | |||||||| Sbjct 19878961 TCAT--GGTTTCCCAGTGTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAA 19878904 Query 37697 ACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTAC 37756 ||| ||| ||||||||| ||| || |||| | || || ||||| || || Sbjct 19878903 GGAAGCCTCTGCCTTCTTATACATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGAC 19878844 Query 37757 AAA 37759 ||| Sbjct 19878843 AAA 19878841 >seq4 Length=130910915 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | ||| ||||| | ||||||||| || Sbjct 34847657 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 34847598 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| || Sbjct 34847597 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 34847538 Query 37320 AC 37321 || Sbjct 34847537 AC 34847536 >seq3 Length=132848913 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | ||| || |||||||| | || ||||| | |||| ||| || Sbjct 126360979 TCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCTTG 126361038 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| || || ||||| ||| Sbjct 126361039 AGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGCT 126361098 Query 37320 AC 37321 || Sbjct 126361099 AC 126361100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592312261372520