Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6 159 3e-34 seq5 132 4e-26 seq2 91.5 1e-13 >seq6 Length=170843587 Score = 159 bits (176), Expect = 3e-34 Identities = 294/424 (69%), Gaps = 8/424 (2%) Strand=Plus/Minus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 ||||||||| ||| | | | || |||| | ||||| ||||| | | ||| |||| Sbjct 62494951 TGGGAAAGGCCTTGGTC-CTCACTGAAGCTCTATTTTCAGTGGTTCAATGCGATTCAGGC 62494893 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | | || | |||| ||||| |||| ||| | ||| || || |||| ||| | Sbjct 62494892 CAATGCGGGCATGTCCCGAAGTGTGTTCAAAGTCTATGGCTTC-AGGCCTGTGATGTGTG 62494834 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 |||||||| ||||| | | ||||||||| ||||| ||| | || || || ||||||| Sbjct 62494833 GGATCATGTAGGTGAGCAAGGGGTAGCTGGCAATGTTGAAGTGCACGCCCAGACCCATGT 62494774 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004 |||||||| |||||| ||||| | || ||||| | || ||| ||| |||| || | Sbjct 62494773 CCCCCGACTCCTGGTACAGCTGGTAGGACAGCTCCCTGT---TCA-GTAGAACTTGCAAA 62494718 Query 30005 TGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30064 |||||||||| | | | | | | |||| | |||||||| | ||| || |||| || Sbjct 62494717 GGGTGTGGCACAGGGCAGGGGGCTTGAGAGGGAGCTCTTTGGGATCCCAAGCACACAGGA 62494658 Query 30065 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30124 |||| | ||||| || | |||| | |||| |||| | |||||||| || || | Sbjct 62494657 TGATTCTTCTGTCCTCAGAGTTGCTTTTGATTGTGTCC-TTACTTTTTGCAGTTGGTCTA 62494599 Query 30125 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30184 | || || ||||| |||| |||| || |||| | || || ||||||||||||| Sbjct 62494598 CTCCTTGGCCTGAGTAATCTGAATTCATATCTTTGTATGCAGC-CCAAAATGCCTCCACT 62494540 Query 30185 GGAA 30188 | || Sbjct 62494539 GAAA 62494536 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 105645754 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 105645813 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| ||||||| |||||| | ||| || || ||||| || | | Sbjct 105645814 ACACCCAGTCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTTACC 105645873 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || ||||| || || || |||||||| Sbjct 105645874 ACGTAGAACTGGCAAAGGGCATGGCATGGGGGGAGGGCCATGAG 105645917 Score = 102 bits (112), Expect = 7e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| || |||| || ||||| |||||||||||||| || || || || || || | | Sbjct 105655143 TCATATCTTTGTATTCAGCTCCAAAATGCCTCCACTGAAAGCCATAAACAGGGCCTAAAT 105655202 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 | || ||||| ||| ||| ||| ||||||| ||||||| ||| || ||||| | Sbjct 105655203 CCCCTTCTTCTCTGGAGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCAT 105655262 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||| || || ||||| ||| || || || | ||||||||| || Sbjct 105655263 CCCAGATTTTCACTCCCTTGGAGGACAGTTCCTTAGCGTTTGTGGATCC 105655311 >seq5 Length=104526007 Score = 132 bits (146), Expect = 4e-26 Identities = 432/653 (66%), Gaps = 30/653 (5%) Strand=Plus/Plus Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826 ||||||| || || || | || |||| | |||||||| || ||| | ||| ||| Sbjct 23434251 GGAAAGGC-CTTGGTTCTCCCTGAAGCTTCATTTTCAGCGGCTCAGTGTGGTTCAGATAG 23434309 Query 29827 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29886 ||||| || | ||||| | ||| ||||| || ||| | | || || || ||||| | Sbjct 23434310 ACGTGTGCATATCCCAAAGCGTGTACAAAGTCGCCCAGCTTCAGACCTGTAACGTGTGTG 23434369 Query 29887 ATCATGTACGTGAGGAGAGAG-TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 ||| |||| ||||| || ||| |||||| |||||| ||||| || || || |||| || Sbjct 23434370 ATCGTGTAGGTGAGCAGGGAGGTAGCTGCTGATGTTGAAGGGCACACCCAGGACCATCTC 23434429 Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG-TCGCTCACGTAAAACTGACACA 30004 || |||||||| || ||||| || | ||||| | | || || || | ||||| || | Sbjct 23434430 CC--GACCTCTGATATAGCTGGCAGGGCAGCTCACAGTTCACT-ACACAGAACTGGCAAA 23434486 Query 30005 TGGTGTGGCAC-GGAGGAAGAG-CCATGAGG--CCCAAG----TCTTTGGGGTTCCAGGC 30056 || | ||||| || | |||| |||| | |||| ||||| || ||||| || Sbjct 23434487 GGGCGAGGCACAGGCAGCAGAGTGGGAGAGGGCCACAAGAAGATCTTTTGGATTCCAAGC 23434546 Query 30057 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAG 30116 |||| |||||| ||| || | |||| | ||| ||| | | |||||||| Sbjct 23434547 ACACAGGATGATTGTTGTGTTGTCAGTGTTGCTTACGATTGTGTCAATCACCTTTTGCAG 23434606 Query 30117 CTGATCCAC--CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174 || ||||| ||| || | | ||||| ||| || |||| | | | ||| Sbjct 23434607 TTGGTCCACTTTTCCA-CCTGAAAAAATCTGCATCCATATCTTTGTATTTGACCCTCAAA 23434665 Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA-AGCC 30233 ||| ||| | || || || || || || | || || |||| || | || | || Sbjct 23434666 CGCCCTCACGGTAAGCCATAAACTGGGCCTAAATCCCCTTCTT-----TGGTGGAGAACC 23434720 Query 30234 CC--TCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30291 || ||| ||| | ||||||| ||| || ||| |||||||| || || ||||| Sbjct 23434721 CCAGGCTT-TCC-AGAAGTCTCAGGATCCAAGGGCATCCCAGATTTTCACTCCCTTGGAA 23434778 Query 30292 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30351 || || ||||| | |||||||| | ||| ||||| || ||||| | || | Sbjct 23434779 GACAGGTCTTTAGCATTTGTGGATACCTTGATCAACCA---CAACTCCTTCCTAACACCG 23434835 Query 30352 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTA 30404 ||| | || || | ||||| || || |||||||| | |||| |||| ||| Sbjct 23434836 TTCTAGAAAACACGTTTGGTTGTCAGCAGGGGAAATTCATCCTTCAGGCTGTA 23434888 >seq2 Length=151935994 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 89251885 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCCGGA 89251944 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 89251945 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTGCCT 89251992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408614547243449