Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 181 2e-40 seq15 122 2e-22 seq9 100 5e-16 seq6 93.3 8e-14 >seq2 Length=151935994 Score = 181 bits (200), Expect = 2e-40 Identities = 186/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 66214622 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 66214681 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || ||||||| || ||||| || | |||||| |||||| Sbjct 66214682 TCCCGGAGGAGGCCAGCAGTGCTGGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 66214741 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| |||||||||||||| |||| Sbjct 66214742 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCATTTGGTGGCCGCCAGC 66214801 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || || | |||||||| |||||||| ||||||| || || Sbjct 66214802 CGGTTCCGCAGCCGCTTGCGCTCTACTTTGATGCGCTCCTGGTCTTCCATGTTAATGGGG 66214861 Query 241625 GAC 241627 ||| Sbjct 66214862 GAC 66214864 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| |||||||| |||||||| || ||||| | | ||| || | ||| Sbjct 59532138 AGGACCTTCTGCTTGAGTTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 59532079 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||||||||||||||| || |||| ||| || ||||| Sbjct 59532078 TCCGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATACGCTCCAGC 59532019 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || |||||||| Sbjct 59532018 TTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTA 59531959 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 59531958 ATGCGCTCCTGAGTGTCCATGTCGATGGGCGAC 59531926 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/115 (76%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | || || ||||||| ||||||| Sbjct 66214659 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCAGCAGTGCTGGACAGCCCCGCGT 66214718 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | |||||| | || |||||||| ||||||||||| |||||||| Sbjct 66214719 TCTCGGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 66214773 >seq15 Length=140412725 Score = 122 bits (134), Expect = 2e-22 Identities = 357/543 (66%), Gaps = 29/543 (5%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||| ||||||| |||||||| |||| || || ||||| Sbjct 19879700 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCTTCCAGTGAAATATTCTC 19879641 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||| ||| ||||| || | | | | | | || || | | ||||| || ||||| Sbjct 19879640 CATAAAGTCAAAGGGATTT--TCTACTCTGAAAACCTTGCTGAAGCCCAGCT---CCAGC 19879586 Query 47957 AGGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | || || ||| |||| ||||| | | ||| | ||| ||||| || || Sbjct 19879585 CTGAGTCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAATTCATCCCAGTG 19879526 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| |||| ||| | ||| ||||||| |||||| || || | | Sbjct 19879525 AGCTTCACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACTGCATTGATGATT 19879466 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || | || || | ||| || ||||||| ||||| | ||| | | || |||| Sbjct 19879465 ATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTGA---ACATCAGGCAG 19879409 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| | ||| || || || || | ||| || |||| || ||| Sbjct 19879408 GCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAAT----ACGTC----------AGGCCA 19879363 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | | ||||||||||| | | || ||||| ||||| ||||| || Sbjct 19879362 GGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAAAAGAAAATT 19879303 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || ||||| || || || | | ||| | ||||| | ||| | ||||| ||| Sbjct 19879302 CCTTCCACGGCAGCAAAGGTGATGACACGTTCTCCACGTGGAGCCTCTTTGTCCCCCATC 19879243 Query 48314 CAG-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| | ||| ||||||||||||| |||||| | || ||||| ||||| ||||| ||| Sbjct 19879242 CAGTGCAAG-GCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAA 19879184 Query 48373 GAG 48375 ||| Sbjct 19879183 GAG 19879181 >seq9 Length=139512083 Score = 100 bits (110), Expect = 5e-16 Identities = 98/124 (79%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 6039527 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGG 6039586 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 6039587 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTTCCTGTCTCTGTCTG 6039645 Query 213647 GGAC 213650 ||| Sbjct 6039646 CGAC 6039649 >seq6 Length=170843587 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 153687468 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 153687409 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || ||||| |||||||||| Sbjct 153687408 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGCGACTCCATGTCG 153687349 Query 241619 ATCGGAGAC 241627 || |||||| Sbjct 153687348 ATGGGAGAC 153687340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931525662129920