Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 6e-15 seq9 84.2 4e-11 >seq3 Length=132848913 Score = 96.9 bits (106), Expect = 6e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || || ||| | ||||||||||| || ||||| |||||||| || || || ||||| Sbjct 126361112 GGAGAACGGGTCGTAGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGGTCTTTTGCA 126361053 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||| |||||||||||| | | | |||| ||||| || ||| |||||||||||| || Sbjct 126361052 TCCATATTCTGGCTCAAGAA-ACGAGGACTGATGCCTGGCCTGACCTTTTCCAACGAACT 126360994 Query 25992 CATCAGCAGGGACGAGG 26008 || ||||| || |||| Sbjct 126360993 TATTAGCAGAGATGAGG 126360977 >seq9 Length=139512083 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || ||||||||| ||||| ||||| || || ||||| || |||| |||||||| || Sbjct 6041743 CTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGGTCCCTGGCACGCTGCTCTTC 6041802 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 | || |||| ||| | | ||| | |||||||| ||||| ||||| |||||||| Sbjct 6041803 CTTCCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGCTCCAG 6041862 Query 222157 ATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||| | || | || || ||||||| Sbjct 6041863 ATAAATAGCAAATGCCCCAGGTCGCT 6041888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928837682726720