Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq7 134 9e-26 seq9 100 2e-15 seq1 91.5 1e-12 >seq7 Length=121844099 Score = 134 bits (148), Expect = 9e-26 Identities = 330/494 (67%), Gaps = 6/494 (1%) Strand=Plus/Minus Query 474383 GGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCT 474442 || || || || || || ||||| ||||| || || | || || || || || | Sbjct 23912256 GGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCC 23912197 Query 474443 TTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCT 474502 || || || || || | || || || ||||| || || | || | || ||||| Sbjct 23912196 TTCACGGACACCGAGCGGCTCATCGGCGATGCGGCCAAGAACCAGGTGGCCATGAATCCC 23912137 Query 474503 GTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC 474562 || ||| | |||||||| ||| | ||||||| | || ||| ||||| | || Sbjct 23912136 CAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTAGTG 23912077 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA 474622 ||||| |||||| | |||||||||| | || || |||| || || || || | || Sbjct 23912076 CAATCCGATATGAAACTTTGGCCTTTTCAAGTAATTAATGAAGGAGGCAAGCCCAAGGTA 23912017 Query 474623 GAAGCAATAC-ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 | | | | || ||| || | ||| || | || || |||| ||||| ||||| Sbjct 23912016 -ATGGTTTCCTACAAAGGGGAGAAAAAAGCCTTCTACCCTGAGGAAATCTCTTCTATGGT 23911958 Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAA-GTAACTGATGCA 474739 | |||| ||||| | || || ||| | | |||| | | | || || |||| Sbjct 23911957 ACTGACCAAGATGAAGGAGACTGCTGAGGC--TTTTTTGGGCTACACTGTCACCAATGCT 23911900 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || || ||||| ||||| ||||| ||||| |||||||| || || || || ||||| || Sbjct 23911899 GTGATCACTGTGCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGC 23911840 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 ||||||||||| ||||| || | ||||| |||||||| ||||| || || |||| Sbjct 23911839 GTCATTGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCATTGCC 23911780 Query 474860 TATGGTCTTGATAA 474873 ||||| | ||||| Sbjct 23911779 TATGGCTTAGATAA 23911766 >seq9 Length=139512083 Score = 100 bits (110), Expect = 2e-15 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| | || || || || |||||| | ||| | || | || || Sbjct 49985942 TGCAGTTGGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCACGGAAA 49985883 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||||||||| ||||| || || || |||| || ||| |||||| | ||||| Sbjct 49985882 AGTGGAAATAATTGCTAATGATCAGGGGAACCGAACCACCCCAAGCTATGTTGCCTTTAC 49985823 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 ||| ||||||| | ||||| |||||||| || | |||| ||| Sbjct 49985822 TGATACTGAACGATTGATTGGTGATGCTGCGAAGAACCAAGTTGC 49985778 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || ||| || ||||| || || || Sbjct 49983591 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCGGCCCCACGA 49983532 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||||||||||||||||||||| ||||| || || ||||| || Sbjct 49983531 GGCGTTCCTCAGATTGAAGTTACTTTTGATATTGATGCCAATGGCATCCTCAATGTCTCT 49983472 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 49983471 GCTGTGGATAA 49983461 Score = 89.7 bits (98), Expect = 3e-12 Identities = 220/329 (67%), Gaps = 6/329 (2%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||| ||||||||||| |||| ||||| ||||| | | | |||| || Sbjct 49984571 ACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACTCAGGCCAGTATTGAGATT 49984512 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| || | ||||||||| || | |||| |||||| | || ||||||||| Sbjct 49984511 GATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACTCGTGCCCGATTTGAAGAA 49984452 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || || ||| || | ||| | Sbjct 49984451 TTGAATGCTGACCTGTTCCGTGGCACCCTGGATCCTGTGGAGAAAGCCCTTCGGGATGCC 49984392 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 || || ||||| || || ||||||| ||||| || || || || ||||| | || || Sbjct 49984391 AAGCTAGACAAGTCTCAGATCCATGACATTGTCCTGGTGGGTGGCTCAACCCGTATCCCC 49984332 Query 475736 AAAATAAGAGAAATGCT--TTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTA 475792 || || |||| ||| | || | | || || || ||| | | ||| | || | Sbjct 49984331 AAGAT-CCAGAA--GCTTCTGCAGGACTTCTTCAACGGGAAAGAACTGAATAAGAGCATC 49984275 Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGC 475821 || || ||||| |||||||| ||||| || Sbjct 49984274 AACCCCGATGAGGCTGTTGCTTATGGTGC 49984246 >seq1 Length=274330532 Score = 91.5 bits (100), Expect = 1e-12 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA-GGTATTCCTCCTGCTCCCAG 476109 || ||||||||| || || ||||||||| || |||| || |||||||||||||| | Sbjct 265930942 ACAAAAGATAATCACCTTCTGGGAACTTTTGAT-TTGACTGGAATTCCTCCTGCTCCTCG 265930884 Query 476110 AGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTAC 476169 ||||| || || |||||||| || ||||| || |||| ||||| |||||| || || Sbjct 265930883 TGGAGTCCCGCAGATTGAAGTCACCTTTGAAATAGATGTGAATGGCATTCTTCGAGTGAC 265930824 Query 476170 TGCT 476173 |||| Sbjct 265930823 TGCT 265930820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268152905455724