Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1 324 2e-83 seq13 188 8e-43 seq544 107 2e-18 >seq1 Length=274330532 Score = 324 bits (358), Expect = 2e-83 Identities = 670/992 (68%), Gaps = 15/992 (2%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||||| ||||||| ||| |||| |||||| | ||| | |||| |||||| || Sbjct 229466859 TGTCTCAGATGCTCGTCCAAACACTGGATGGCGAAGAGGTCGATGTCTGTGTCGAACTTG 229466800 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || |||| || || | | | | || ||||| || ||| |||| ||||| ||| Sbjct 229466799 TTGGCAAACAAGTGATGTGTGCGCAGCAG---CCAGTTCAAGTCACCGGCTCCGAAAACG 229466743 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || || | ||| | |||| |||| || ||||| | || || || | ||||| Sbjct 229466742 CACACAGAGCGCACGTGGATGCCGCTGCACGGTGGGTAGGGGGCGCCCTTGGAAACGTCG 229466683 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| ||||||||||||| |||||||| || |||| |||||||| || ||||||| Sbjct 229466682 CCTTCAAAGTACTGCCACTTGACAAACCTTGCAATCGAATGCATGTCAGACATGTCGTAC 229466623 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 |||| | | || | | || || || | || || | || | |||||||| || Sbjct 229466622 TTGTGGCTTAAGGACAGTGAGCCTGGGACTTCTGGGATCCTTTGAATAGTGGCCCAGAGA 229466563 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCC 160406 | || || |||||||| ||||| || | ||| ||||| |||| |||| | | Sbjct 229466562 TACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTCTGGATTTTTTCATTC 229466503 Query 160407 CGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATC 160466 ||| || | || || || | || || || || || ||||| || || | Sbjct 229466502 TCCAGCACATACTCCACATAACTCCTACTGACCACGAAATAGGCACTGCCTGAAAACAAA 229466443 Query 160467 GGTATGGGTATAGGCGGC-GTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525 || | | ||| || |||| |||||| || |||| | || | ||| ||||| Sbjct 229466442 GGGGTCTCAAGAGGAGGATGTGT-TTTGTCGGTCCCCATGTTTGTCAGCTTTCCATTCAC 229466384 Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585 | | || | || ||||||| | | |||| | |||||| | ||| || || || Sbjct 229466383 AACTGTGTAATGTTTTTTCCACCGTTCTTTTTTGTTGGATGGCATTCTTTCAGTTTCAAG 229466324 Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645 || | |||| | ||| || ||| | |||| || || ||||| || || | || Sbjct 229466323 GTTGCTCCCACCCTTTAGCAGCTTGAGCATCCTGACAATTTCCAGGTTGGTTTTAATAGG 229466264 Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705 || || ||||||| | ||||||| ||||||||| | || ||| | || ||||| Sbjct 229466263 GAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCATTCATCTGGTAGAGGTC 229466204 Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765 | |||||| || | || ||||| || |||||||| || || ||||| || |||| || Sbjct 229466203 CTGCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCATGATGCATACACCACACTCTCCAG 229466144 Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAA 160822 || ||||||||||||||| ||| ||| || || | || || ||| | |||||||| Sbjct 229466143 TTGACTGGCCACAAAGACATTACTGAAGCAGGATGCAATACCAATCACTGCGGCCAGAAA 229466084 Query 160823 GAA--CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAG 160880 | | | ||| || ||| ||||||||| | |||||| | ||||||||| ||| Sbjct 229466083 GGATTCCTCTGAT-----TTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAG 229466029 Query 160881 ATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCT 160940 |||||||| || | || || | ||| || || || ||||| | ||| ||||| || ||| Sbjct 229466028 ATGGCCCTCAGGAGTCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCT 229465969 Query 160941 ATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATA 161000 || ||||| || | ||| || ||| || | | || | || || ||| ||||||| Sbjct 229465968 ATTGGAAATTCTGCCTCTTCTTTACTAAGCGGTTCTGTAATATATTTGCGCTTCTTGATG 229465909 Query 161001 AAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| || ||||| |||||||| || || Sbjct 229465908 AAAGAAGGGCAATCAGCAGTCATGTTTATGTA 229465877 Score = 91.5 bits (100), Expect = 2e-13 Identities = 181/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 160120 GGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTA 160179 ||||| |||||| || |||||||||| ||| || | ||| | | |||||| | || Sbjct 112426313 GGTGATGGTTCTGAAGAATCCAGTGCAAGTCCCCAGCCCCATAAATGCAGACAGCGCGCT 112426372 Query 160180 TGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACT 160239 ||| | || ||||||| || | || || | |||| || || | | || Sbjct 112426373 GGTGGATTCCAGAGCAAGGCTCATAAGGCGCCCCCATGCTGACGTTTCCCTCATGGCCCT 112426432 Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299 ||||||| || | |||||| || || |||||| ||| ||| | ||| || Sbjct 112426433 GCCACTTGACCAGCCTGGCAATGGCAGTCATGTCCGAGATGTGAAACTTGGGGTGGTAGG 112426492 Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359 |||| | ||||| | | ||| |||||| ||||||||||| || ||||| ||||||| Sbjct 112426493 GAACAGAGCCGGGCATCCAGGGGGCACGCTGAAGGGTGGCCCAGAGATGTTCATCGGGGC 112426552 Query 160360 TGTACGTGTCCTTAGACCATTCCATGAA 160387 | || ||||| || | |||||| || || Sbjct 112426553 TATAGGTGTCTTTGGCCCATTCGATCAA 112426580 >seq13 Length=208334590 Score = 188 bits (208), Expect = 8e-43 Identities = 232/317 (73%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 || || | ||| | | |||| || ||||| || | || || || |||||||||||| || Sbjct 147478205 AGGGTGAGGCAGGCTATTCCTGAGATCTTCCCGGCACCAAAGGTATTGAAGAGGCACTTG 147478264 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || || || ||||||| |||||||||||| || || | |||||||| ||| ||| Sbjct 147478265 TAACAACCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCC 147478324 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || ||||||| ||| ||||||||||| || ||||||| | Sbjct 147478325 AGCTGGGTGATGTTTATCTTGTCCTTATAAGCAGGCTGAACTACAACCCCATGGTTCTTG 147478384 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||||||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 147478385 CTGAAGGTGATCATGTTTTCTGGGCTCACAGCCTTGATTTTTTGCCATGTCACAATCAAA 147478444 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | ||||| || ||||| | ||||| || ||||||||| | |||| Sbjct 147478445 ACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCCGCTCTCTT 147478504 Query 168453 TCATCTTGAGTTACGAC 168469 ||||||| || || || Sbjct 147478505 ACATCTTGGGTCACCAC 147478521 Score = 105 bits (116), Expect = 8e-18 Identities = 158/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| || || |||| ||| |||||||| || Sbjct 147476085 GTTTCCCTGTA-GTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TT 147476140 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || |||||||| || ||||| | || | ||||| || ||| || || ||||| Sbjct 147476141 CCCCACCTGACTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGACGTTGTCCCATT 147476200 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | | |||| | | | || ||||||||||||||||| || | | ||||||| | || Sbjct 147476201 GGGGTGTACGAGAATCTCAGTACTGTTCTCAATCCCTGACCCAGATATCTTCCAGGAGAT 147476260 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | ||| || || || || | |||||||| || ||||||| Sbjct 147476261 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 147476301 >seq544 Length=134991 Score = 107 bits (118), Expect = 2e-18 Identities = 170/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | |||||||| |||||| | | ||||| ||| Sbjct 63024 TCCAGTTAAAGTAACTAAGGTATAATTTGTTGTTTTTATCTACTTCTTTCAGATACTTTG 63083 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 | || |||| ||| |||| |||||| | || || || |||| | || |||||| || | Sbjct 63084 CAAGCTCACTTGGAGAGTTATAATCTTCCACGTGAATGAATGAATCTGCTGGAATATAAT 63143 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 63144 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACTGAGCCAGCCAGAAAAGCAT 63203 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| ||| || || |||| |||||||||||||||| | ||| || | Sbjct 63204 TGTAGAGCTTTTCTGTGATATAATCTTTGTGGATTGAGTTTTCAAAAGACAGATAAAATT 63263 Query 176422 TACA 176425 | || Sbjct 63264 TGCA 63267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577214777057880