Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq9 100 3e-16 seq3 86.0 7e-12 >seq9 Length=139512083 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 75876 TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGG 75935 ||||| | || || || | || ||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 6039668 TTTGGTATGCCATCATCGAGTCGCAGACAGAGACAGGAACCCCATACATGCTCTACAAAG 6039609 Query 75936 ATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTT 75995 || | ||||| |||||| ||||| |||| ||||||||||||| || || || | Sbjct 6039608 ATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACAATCAAATGCAGCAACCTGT 6039549 Query 75996 GCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 |||| ||||| | |||||||| || |||||| Sbjct 6039548 GCACAGAAATAGTGGAGTACACCAGCAAAGATGAG 6039514 >seq3 Length=132848913 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 ||||||| |||||||||||||| || ||| ||| || |||||||| ||||||||||||| Sbjct 126359201 AGAATCCCTTTGACTTTATGGAGAATATTTCCCTGGAGGGGAAGACAAACTTCTTTGAGA 126359142 Query 65501 AGCGAGTTGGGGACTAT 65517 || |||| || || ||| Sbjct 126359141 AGAGAGTAGGCGAGTAT 126359125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565028785440