Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq15 91.5 2e-13 seq3 86.0 9e-12 >seq15 Length=140412725 Score = 91.5 bits (100), Expect = 2e-13 Identities = 222/334 (66%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 18373 ACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATA 18432 ||| || || |||| || ||||| || | | || |||||||||||||||| || || Sbjct 19879210 ACAAGGCATTGTCTCGATGGCATTGAAGAGAAATTCGCTTTCTTTGGAATCTTTGATGTA 19879151 Query 18433 AGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACT 18492 ||| || || | | ||||||||||||||||||| ||||||| || || || || | Sbjct 19879150 AGTATCAATGAGGAGGCTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCC 19879091 Query 18493 ATAAAACGATCTAGCCTCGGGATATTGAATCTC---GCTATAAAATCTTTCTACCAAATT 18549 ||| || | | ||| || | | ||||| || ||| ||| | || ||||| || Sbjct 19879090 ATAGAAACAACGAGCTTCTGTAATCTGAATTTCTTGGCT---AAACCACTCCACCAAGTT 19879034 Query 18550 CTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAA-AACATATTTAATGAAATGTT 18608 |||| || || || ||| | ||| || || ||||| | || | ||| |||| | Sbjct 19879033 TTCATCCACGATGCCATCACTTGCTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATC 19878974 Query 18609 TTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCG 18668 | || ||| ||| | | | ||| | | || | || || || | || || || | Sbjct 19878973 TCTCCTTAGGCTTCATGGTTTCCCAGTGTTGAATGCCCTTGGAGAGGCCCACCTCCTCAG 19878914 Query 18669 ATGTCCAAAAAGATGATTCGGCCTGTTTGTACAT 18702 ||||||||| || | || |||| || ||||| Sbjct 19878913 CTGTCCAAAAGGAAGCCTCTGCCTTCTTATACAT 19878880 >seq3 Length=132848913 Score = 86.0 bits (94), Expect = 9e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 |||||||||||||||| || ||||||||||| | | ||||||||||||||||||| Sbjct 126363333 TTTCTTTGGAATCTTTGATGTAAGTGTCGATGAGGAGGCTATACATTTCAGAATGTATGT 126363392 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 ||||||| || || || || | ||| || | | ||| |||| Sbjct 126363393 TTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTCGG 126363434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731866392030800