Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 1e-11 >seq1 Length=274330532 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/208 (70%), Gaps = 13/208 (6%) Strand=Plus/Plus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||| | ||| ||| || || || || ||||| || || ||| |||| |||| || Sbjct 255801327 ATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTT 255801385 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 | || |||||| |||| | ||| || || ||||| || |||||||| ||||| || || | Sbjct 255801386 GCTTGCCAGCAGAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCT 255801445 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 || |||| ||| ||| | ||| ||| | ||||| ||||| || || | Sbjct 255801446 TAGCATTTATATTTTCTATTGTATC----------ACT-CGAGAGTGATGGTCTTGCCTG 255801494 Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539 | | | || | |||||||||||| || Sbjct 255801495 TCAGCCTCTTCACAAATATCTGCATCTT 255801522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984472267832550