Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq12 95.1 4e-14 seq15 91.5 4e-13 >seq12 Length=61602749 Score = 95.1 bits (104), Expect = 4e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || ||||| || || || || ||||||| ||||| || |||||||| | ||| Sbjct 52795412 GTCTTGACCGCTGTGTCGATGAGCCCCTCACGACCCCCCATGGCGTGGAAGAAGAACTCG 52795353 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCG 302739 ||| || || | | ||||| |||| || || ||||| ||||||| || | Sbjct 52795352 GTGGGTGTGAGGCCGGCCAGGTAGGAGTTCTCCACAAAGCCACGGCTCTCGGGCCCATAG 52795293 Query 302740 TCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCA 302799 || |||| | ||||| ||||| |||| || || | || ||||||| ||||| || Sbjct 52795292 TCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAATCCAAATGGGATCCGCTTGCCC 52795233 Query 302800 TCAACGTTCTGCTGTCC 302816 || ||||||||||| || Sbjct 52795232 TCCACGTTCTGCTGCCC 52795216 >seq15 Length=140412725 Score = 91.5 bits (100), Expect = 4e-13 Identities = 281/423 (66%), Gaps = 19/423 (4%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAA-CAGCAAGA 133134 ||||| || || || || || || | || || |||||||||||||| || ||| | | Sbjct 19878841 TTTGTCATCTTTCCTATCAAATACCATGACATCTGGCAGATGTATAAGAAGGCAG-AGGC 19878899 Query 133135 TTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCT 133194 || |||||||| | || || | | ||||| | | ||||||||| || | Sbjct 19878900 TTCCTTTTGGACAGCTGAGGAGGTGGGCCTCTCCAAGGGCATTCAACACTGGGAAACCAT 19878959 Query 133195 TACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATG 133253 | | || | | |||||||||| || || || || || ||||| || ||||||| Sbjct 19878960 GAAGCCTAAGGAGAGATATTTTATTTCACATCATCTTGGCTTTCTTTGCAGCAAGTGATG 19879019 Query 133254 GTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCC 133313 | || || |||||| || | |||||| |||| |||| | | ||||| | Sbjct 19879020 GCATCGTGGATGAAAACTTGGTGGAGTGGTTTAGCCAAGAAATTCAGATTACAGAAGCTC 19879079 Query 133314 GTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATT--CTAC 133371 || || ||||| | || ||||| |||||||| || |||||| | ||| || | Sbjct 19879080 GTTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGCCTCC 19879139 Query 133372 TCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA--CAAA---CTATTCAACGCC 133426 || ||||||||||||||||||||| |||| ||| | | || || ||||| ||| Sbjct 19879140 TC--ATTGATACTTACATCAAAGAT----TCCA-AAGAAAGCGAATTTCTCTTCAATGCC 19879192 Query 133427 ATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGA 133485 | | | || | | |||||| | || ||| | | |||||||| | | ||||| ||| Sbjct 19879193 A-TCGAGACAATGCCTTGTGTAAAGAAGGAGGCAGACTGGGCCTTGCACTGGATGGGGGA 19879251 Query 133486 CAA 133488 ||| Sbjct 19879252 CAA 19879254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471806040252581