Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq14 136 4e-27 seq1 86.0 6e-12 seq12 82.4 7e-11 >seq14 Length=141755446 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || ||||| || || || || ||||| || ||| Sbjct 28260468 GATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAG 28260527 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| ||||| || || || || || Sbjct 28260528 CGACACCATCGAGAATGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 28260587 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||||| |||||||| ||| | | | | |||| || || || Sbjct 28260588 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28260647 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || |||||||| |||| ||| | ||||| Sbjct 28260648 CATCCAGAAGGAGTCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGG 28260695 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || | || ||||| || || || || ||||| || ||| Sbjct 28259100 GATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAG 28259159 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 28259160 CGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 28259219 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||||| |||||||| ||| | | | | |||| || || || Sbjct 28259220 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28259279 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 28259280 CATCCAGAAGGAGTCCACCCTGCACCTGGT 28259309 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || ||||| || || || || ||||| || ||| Sbjct 28259556 GATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAG 28259615 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| ||||| || || || || || Sbjct 28259616 CGACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 28259675 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||||| |||||||| ||| | | | | |||| || || || Sbjct 28259676 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28259735 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 28259736 CATCCAGAAGGAGTCCACCCTGCACCTGGT 28259765 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || ||||| || || || || ||||| || ||| Sbjct 28260012 GATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAG 28260071 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| ||||| || || || || || Sbjct 28260072 CGACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 28260131 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||||| |||||||| ||| | | | | |||| || || || Sbjct 28260132 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28260191 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 28260192 CATCCAGAAGGAGTCCACCCTGCACCTGGT 28260221 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || ||||| || || || || ||||| || ||| Sbjct 28260240 GATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAG 28260299 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| ||||| || || || || || Sbjct 28260300 CGACACCATCGAGAATGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 28260359 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||||| |||||||| ||| | | | | |||| || || || Sbjct 28260360 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28260419 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 28260420 CATCCAGAAGGAGTCCACCCTGCACCTGGT 28260449 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || ||||| || || || || ||||| || ||| Sbjct 28258188 GATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAG 28258247 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 28258248 CGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 28258307 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||||| |||||||| ||| | | | | |||| || || || Sbjct 28258308 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28258367 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 28258368 CATCCAGAAGGAGTCCACCCTGCACCTGGT 28258397 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || ||||| || || || || ||||| || ||| Sbjct 28258416 GATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAG 28258475 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 28258476 CGACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 28258535 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||||| |||||||| ||| | | | | |||| || || || Sbjct 28258536 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28258595 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 28258596 CATCCAGAAGGAGTCCACCCTGCACCTGGT 28258625 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || ||||| || || || || ||||| || ||| Sbjct 28258644 GATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAG 28258703 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 28258704 CGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 28258763 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||||| |||||||| ||| | | | | |||| || || || Sbjct 28258764 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28258823 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 28258824 CATCCAGAAGGAGTCCACCCTGCACCTGGT 28258853 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || ||||| || || || || ||||| || ||| Sbjct 28258872 GATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAG 28258931 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 28258932 CGACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 28258991 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||||| |||||||| ||| | | | | |||| || || || Sbjct 28258992 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28259051 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 28259052 CATCCAGAAGGAGTCCACCCTGCACCTGGT 28259081 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || ||||| || || || || ||||| || ||| Sbjct 28259328 GATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAG 28259387 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 28259388 CGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 28259447 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||||| |||||||| ||| | | | | |||| || || || Sbjct 28259448 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28259507 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 28259508 CATCCAGAAGGAGTCCACCCTGCACCTGGT 28259537 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || ||||| || || || || ||||| || ||| Sbjct 28259784 GATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAG 28259843 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 28259844 CGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 28259903 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||||| |||||||| ||| | | | | |||| || || || Sbjct 28259904 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 28259963 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 28259964 CATCCAGAAGGAGTCCACCCTGCACCTGGT 28259993 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || | || ||||| || || || || ||||| || || Sbjct 28257958 ACAATGCAGATCTTTGTAAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCC 28258017 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||| ||||| ||||| || || || || || Sbjct 28258018 AGTGACACCATTGAGAATGTCAAGGGGAAGATTCAAGAAAAAGAGGGCATCCCCCCAGAC 28258077 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||||||||| |||||||| ||| | | | | |||| || || Sbjct 28258078 CAGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 28258137 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || ||||| || || || ||| |||| Sbjct 28258138 AACATCCAGAAGGAGTCCACCCTGCACCTGGT 28258169 >seq1 Length=274330532 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/209 (69%), Gaps = 12/209 (6%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || | ||| || || || || || || ||||| || Sbjct 255801520 GATGCAGATATTTGTGAAGAGGCTGACAGGCAAGACCATCACTCTCGA-GT--------- 255801471 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| |||| |||||||| || || |||||||| ||||| || || Sbjct 255801470 -GATACAATAGAAAATATAAATGCTAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 255801412 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||| ||| || || || ||||| ||| | | |||| || || || Sbjct 255801411 GCAAAGACTGATCTCTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 255801352 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||||||||| || || || || |||| Sbjct 255801351 CATTCAAAAGGAGTCCACTCTTCATCTTG 255801323 >seq12 Length=61602749 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 59172094 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 59172035 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || || ||||| || Sbjct 59172034 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAG 59171975 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||||||| | | | || ||||| ||| Sbjct 59171974 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAAC 59171915 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || || || || || || |||| |||| Sbjct 59171914 ATCCAGAAAGAGTCCACCCTCCATCTGGTTCTGCG 59171880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894152659640