Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq6 84.2 2e-11 >seq6 Length=170843587 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGG-TAAATGGCCG 34495 ||| | ||| || || || |||||||| | | || || ||||| ||| || | | | Sbjct 133597916 ATCAAACTGGGTCTGTGCTCCCAGCTCACGATCAAAATA-TTTGTTGGGATACGTAGGAG 133597974 Query 34496 GACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGC 34555 | || |||| | ||||| | || ||||||| || || |||||||| || || | Sbjct 133597975 GCCGATTAAGCACTTTGGCTACGTCAACTGTGTTGACTATAACTGTCTTGATTCCATTTC 133598034 Query 34556 CCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGC 34613 | || |||||||||||||| |||| || | ||| |||||||| |||||| ||| | Sbjct 133598035 CTTTGCCTTCGACCTTGGCAATCAGA--CGGGCCATCTTGTAGCGATAGAACTGGTCTGA 133598092 Query 34614 CACATTGCGGTTAACGTTCACAG 34636 |||| ||| || ||||| |||| Sbjct 133598093 CACACTGCCATTGACGTTGACAG 133598115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412838515686209