Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq14 113 3e-20 seq12 113 3e-20 seq1 86.0 5e-12 >seq14 Length=141755446 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| ||||| || || ||||| || || || ||||| || || | Sbjct 28260695 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 28260636 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || ||| | |||| || ||||| || || || Sbjct 28260635 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 28260576 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || |||||| | || | ||||| | || ||| Sbjct 28260575 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACT 28260516 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || ||||| ||||| || || || |||||||| Sbjct 28260515 TCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28260469 >seq12 Length=61602749 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| |||||| |||| ||| || ||||| ||||| || ||||| ||||| | | Sbjct 59171868 CCACCCCTCAGACGCAGAACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 59171927 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| ||| | || | || ||||| || || ||| Sbjct 59171928 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 59171987 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || || || | || || ||| | || | |||||| | || || Sbjct 59171988 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 59172047 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | ||| || || || ||||||||||| Sbjct 59172048 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 59172097 >seq1 Length=274330532 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/207 (69%), Gaps = 11/207 (5%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||||||||| || || | | || || ||| || ||||| Sbjct 255801327 ATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTG 255801386 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||| ||||||||| || || ||||| || || || || || | || Sbjct 255801387 CTTGCCAGCAGAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 255801446 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || | | |||||| || ||| || ||||| || || ||||| || Sbjct 255801447 AGCATTTATATTTTCTATTGTATCA-----------CTCGAGAGTGATGGTCTTGCCTGT 255801495 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | | || |||||||||||||| || Sbjct 255801496 CAGCCTCTTCACAAATATCTGCATCTT 255801522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216322051433