Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq9 116 3e-20 seq12 95.1 9e-14 seq15 89.7 4e-12 seq1 89.7 4e-12 >seq9 Length=139512083 Score = 116 bits (128), Expect = 3e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 49984888 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 49984947 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || |||||||| ||| Sbjct 49984948 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCGTTAAAGTAT 49985007 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || | ||| |||| Sbjct 49985008 GCTGGTACTGTGACAACAGCAT 49985029 >seq12 Length=61602749 Score = 95.1 bits (104), Expect = 9e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || ||||||||||||| ||||| ||||| || || | || |||||| | Sbjct 22009580 TGTACGCTTATCCTGACAGAGGGAGACTCAGCCAAAACTTTGGCAGTTTCAGGCCTTGGT 22009639 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| ||||| | || ||||||||||| ||||| |||||| | | |||||| | Sbjct 22009640 GTGGTTGGGAGAGACAAATACGGAGTTTTCCCTCTTAGGGGAAAAATACTCAATGTTCGA 22009699 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 22009700 GAAGCTTCTCATAAA 22009714 >seq15 Length=140412725 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131181 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 131240 |||| || ||||| ||||| ||||| ||||||||| | || || | || ||||||| Sbjct 54007692 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGTAAAGTCATTCATT 54007633 Query 131241 ACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300 | || ||||| ||| | || ||| ||||| || || ||||||||||| || ||||||| Sbjct 54007632 ATGGTGCTCCTAAGGAGATAGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 54007573 Query 131301 GA 131302 || Sbjct 54007572 GA 54007571 >seq1 Length=274330532 Score = 89.7 bits (98), Expect = 4e-12 Identities = 123/171 (72%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCACATT 281436 ||| ||||| || || || || |||||| ||| ||| || | |||||||| Sbjct 265930775 ATTGGTAATTGTGATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCAGTCACTCG 265930831 Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 |||||| ||||| |||| | ||||| ||||||||||| || ||||| || | |||| Sbjct 265930832 AAGAATGCCATTCACATCTATTTCAAAGGTGACTTCAATCTGCGGGACTCCACGAGGAGC 265930891 Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 281547 ||| || || || ||||| ||| ||||||||| | ||||||||| || Sbjct 265930892 AGGAGGAATTCCAGTCAAATCAAAAGTTCCCAGAAGGTGATTATCTTTTGT 265930942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740600304290538