Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 6e-12 >seq3 Length=132848913 Score = 86.0 bits (94), Expect = 6e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | ||| || ||| | ||| ||||||| |||| ||| || Sbjct 126093307 TCCAGCATCTGGGGACCGACCTGTGACGGCCTGGATCGCATTGTCGAGCGCTGTCGTTTG 126093366 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || ||| | || || ||||| ||| | | |||||||||||||| ||||||| ||| | Sbjct 126093367 CCCGAGATGCATGTCGGCGATTGGATGCTCTTTGAAAACATGGGTGCTTACACGGTGG-C 126093425 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTC 21294 ||| |||| || || || || |||| | ||||| | ||||||| || || Sbjct 126093426 TGCTGCTTCCACGTTCAATGGATTCCAGAGGCCAGCCATCTACTATGTGATGTC 126093479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463542048081840