Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq14 93.3 4e-14 >seq14 Length=141755446 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/109 (79%), Gaps = 4/109 (4%) Strand=Plus/Minus Query 171 CACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCAAG 230 |||| || || ||||| |||| ||||||||||| |||||||||||||||| ||| |||| Sbjct 30557074 CACAGAATCCAGAACAGATTATGAGAAAAATTCAATATAATTTATTAAATAGTTTCCAAG 30557015 Query 231 GGCTTCTTTAAGAAGCATTAACAATCTAACAACATTTTATAAATAACAA 279 |||| || ||| | || ||||||||| | || | ||||||| ||| Sbjct 30557014 GGCTCCTCCAAGGATCAATAACAATCTTA----ATATGATAAATATCAA 30556970 Score = 86.0 bits (94), Expect = 5e-12 Identities = 237/358 (66%), Gaps = 18/358 (5%) Strand=Plus/Minus Query 415 ATTTCAGGCACTTTGAAAACATTTCTAAAACACACTGTATGAACACttttttttGATAGC 474 || |||| ||||||||||| || ||||| | || |||| ||| || | ||| Sbjct 30556777 ATGTCAGACACTTTGAAAATGCTTTTAAAATAGACAAGGTGAAGCTTTTACCTTCAAAGC 30556718 Query 475 TGTCTGTAGGCATAGAAA------TGTCTGGTGCGCGTTGCAATTCAAGTTTTTTGAGAT 528 | | |||||||| || || | ||||| | | || |||| ||||| | ||||| Sbjct 30556717 TATTTGTAGGCACAGGAACTGTTGTTTCTGGCCCCTGCTGAAATTTGAGTTTGTGGAGAT 30556658 Query 529 GGTCCATGACATCAGTAAAACTATTTGTGTCATTAAAAAATGAT---TTGATGGCTCTAA 585 ||| |||| ||| | | || ||| ||| || || ||||||||||| | Sbjct 30556657 GGTTTATGATGTCAATTATGTCATC---GTCGTTATCGAACGAACGCTTGATGGCTCTGA 30556601 Query 586 AATAAGGCAGGATGGCTGAACTGTTGATGTTGTGTGGTGGCTGGGGGCTCACAGAAAAGC 645 |||||||||||||||||| || | |||||||||||| | |||||| | | || | | Sbjct 30556600 GATAAGGCAGGATGGCTGAGCTCTCGATGTTGTGTGGCGATTGGGGGTTGAAAGTGAGAC 30556541 Query 646 ACTGCATGCGGCACGTGCATGATTTTACTAATCCCTTATTCTCTTTCTGCTTCTGTGG-- 703 || | || || || || | | || || | | | |||||||||| | |||||| Sbjct 30556540 ACGGTATCTGGAAC-CGC-TCCTGTTCCTGCACACCT-TTCTCTTTCTCTTCCTGTGGAA 30556484 Query 704 -AAGGAGAGGAAATGGGTGAGCATTAGTGTTGTAAAGCAGTCAGAAACCCTGATAGCT 760 |||||| | | || ||| ||||| | | ||| ||| |||||| || | |||| Sbjct 30556483 CAAGGAGGAGCGACAGGCGAGGGTTAGTTTGGCAAAACAGACAGAAATCCCAACAGCT 30556426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438556639534000