Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq12 165 2e-35 seq14 150 4e-31 seq1 141 2e-28 seq7 132 9e-26 seq15 100 6e-16 >seq12 Length=61602749 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||||||||| | || ||||| || |||||||| || || ||||||| Sbjct 59171638 TACCACCCCTCAGACGCAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAG 59171697 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || || |||||||| || || || || || || | Sbjct 59171698 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGG 59171757 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || ||||| || || || ||| | || || | Sbjct 59171758 GAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCA 59171817 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| ||||| ||||| || || |||||||| Sbjct 59171818 CCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 59171866 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | || ||||| || |||||||| || || |||||||| Sbjct 59171412 CCACCCCTCAGACGGAGGACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 59171471 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || |||||||| || || || || || || || Sbjct 59171472 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 59171531 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || ||||| || || || ||| | || || || Sbjct 59171532 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 59171591 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| ||||| ||||| || || |||||||| Sbjct 59171592 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 59171638 >seq14 Length=141755446 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | || || || | |||||| || || || ||||| || || || ||||| Sbjct 28258187 CCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 28258128 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || |||||||| || || || || ||||| || Sbjct 28258127 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 28258068 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || ||||||||||| | || ||||| ||||| || ||| | || || ||| Sbjct 28258067 ATGCCCTCTTTTTCTTGAATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 28258008 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || ||||| || ||||| ||||||||||| ||||||||| Sbjct 28258007 TCCAGGGTGATGGTCTTACCAGTCAAGGTCTTTACAAAGATCTGCATT 28257960 >seq1 Length=274330532 Score = 141 bits (156), Expect = 2e-28 Identities = 152/203 (75%), Gaps = 11/203 (5%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || || ||||| | | | | || ||||| ||||| Sbjct 255801328 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 255801387 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||| |||| |||||||| || || ||||| |||||||||||||| || ||||| Sbjct 255801388 TTGCCAGCAGAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTA 255801447 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||| |||||| || |||||| || | ||| || |||||||||||| Sbjct 255801448 GCATTTATATTTTCTATTGTATCA-----------CTCGAGAGTGATGGTCTTGCCTGTC 255801496 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | | |||| |||||||||||||| Sbjct 255801497 AGCCTCTTCACAAATATCTGCAT 255801519 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| ||||||||||||| || || ||||| ||||||||||| || || ||| Sbjct 86190545 TGGTGGTACTTCGTATCTAAAGGTATTGAGTATTTAGACACGGTGTTTTTTATCCTGAGG 86190604 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | || ||||||||||| | ||| |||||||| || Sbjct 86190605 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACGTTG 86190664 Query 60275 GGATGGGTAGGCATTAAATGG 60295 | ||| | || ||||| ||| Sbjct 86190665 TGGTGGATCGGAATTAAGTGG 86190685 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368 |||||||||||||||| ||| |||||||||| |||||||| || ||||| | || |||| Sbjct 86191749 AAGCATTTTTCGGAGCCCAGCTGAATTCCTTCATCCATGTGATCATGTACTCATACTATG 86191808 Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428 | | | || | ||| || | || | |||||| | |||||||| || || || || | Sbjct 86191809 GGCTAACTGCCTTTGGGCCATGGATTCAGAAGTATCTTTGGTGGAAACGATACCTGACCA 86191868 Query 60429 TAATGCA 60435 | |||| Sbjct 86191869 TGTTGCA 86191875 >seq7 Length=121844099 Score = 132 bits (146), Expect = 9e-26 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||||||| | |||||||| || || || || |||||| | Sbjct 52639541 CCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGGTCAGGCGGAATTCCTATC 52639482 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || ||||||||||| | ||||| ||||| || || | ||| Sbjct 52639481 TTATCCTGGATCTTAGCCTTTACATTTTCTAATGTATCTGAGGGTTCAACCTCGAGAGTG 52639422 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||||||||||| ||||| |||||||| ||||| Sbjct 52639421 ATGGTCTTGCCTGTCAGGGTCTTCACAAATATATGCAT 52639384 >seq15 Length=140412725 Score = 100 bits (110), Expect = 6e-16 Identities = 153/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||| || | || ||| || || ||| | | || || |||||||| ||| | ||| ||| Sbjct 63374204 CAGGACCAGGTACAGGGTCGACTCTGTTTAGATGTTGTAATCAGAGAGATGT-TACTGTC 63374146 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| || ||||| || |||||||| || | || || || | || || ||||||||||| Sbjct 63374145 TTCCAGCTGTTTGCCTGCAAAGATGAGCCGCTGCTGGTCAGCTGG-ATGCCTTCCTTATC 63374087 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 || ||||| || || ||||| || || || ||| | || || || |||| || || || Sbjct 63374086 CTGGATCTTGGCCTTCACATTCTC-ATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 63374028 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || ||||| || || |||||| Sbjct 63374027 CTTGCTGGTTAAGGTCTTGGTGAAGATTTGCATT 63373994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981819488667807