Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1 223 4e-53 seq13 206 3e-48 seq544 127 2e-24 >seq1 Length=274330532 Score = 223 bits (246), Expect = 4e-53 Identities = 652/1001 (65%), Gaps = 9/1001 (1%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||| | ||||||| |||| |||||| | |||||||| ||||| | ||| || Sbjct 229466870 CCAGTGCTTTATGTCTCAGATGCTCGTCCAAACACTGGATGGCGAAGAGGTCGATGTCTG 229466811 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||||||||| || |||| |||||| | | | || ||| || | || || | Sbjct 229466810 TGTCGAACTTGTTGGCAAACAAGTGATGTGTGCGCAGCAG---CCAGTTCAAGTCACCGG 229466754 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| |||||||| || |||||||| | |||||||||||| || || |||| || | Sbjct 229466753 CTCCGAAAACGCACACAGAGCGCACGTGGATGCCGCTGCACGGTGGGTAGGGGGCGCCCT 229466694 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| |||||||| || ||||| | || | |||||||| | Sbjct 229466693 TGGAAACGTCGCCTTCAAAGTACTGCCACTTGACAAACCTTGCAATCGAATGCATGTCAG 229466634 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||||||||||| | | | || | || || || | || | || || | || Sbjct 229466633 ACATGTCGTACTTGTGGCTTAAGGACAGTGAGCCTGGGACTTCTGGGATCCTTTGAATAG 229466574 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || ||||| || || || || || | ||||||||| |||| | || Sbjct 229466573 TGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTCTGGA 229466514 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | || | || || || ||| | || | || || || || | Sbjct 229466513 TTTTTTCATTCTCCAGCACATACTCCACATAACTCCTACTGACCACGAAATAGGCACTGC 229466454 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| || | | |||||| | |||||| ||| |||| | | Sbjct 229466453 CTGAAAACAAAGGGGTCTCAAGAGGAGGATGTGTTTTGTCGGTCCCCATGTTTGTCAGCT 229466394 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | || || || || |||||| | | || ||| | | || Sbjct 229466393 TTCCATTCACAACTGTGTAATGTTTTTTCCACCGTTCTTTTTTGTTGGATGGCATTCTTT 229466334 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || || || || | | |||| | ||| ||| | || || || || |||| Sbjct 229466333 CAGTTTCAAGGTTGCTCCCACCCTTTAGCAGCTTGAGCATCCTGACAATTTCCAGGTTGG 229466274 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| || || || | ||||||||||| || | || ||||| | | | | Sbjct 229466273 TTTTAATAGGGAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGTCTGCATTCATCT 229466214 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| || || ||||| || || ||||| | Sbjct 229466213 GGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCATGATGCATACACCA 229466154 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA--- 162835 | ||||||| | |||| ||||||||||| ||| || || | || || |||| Sbjct 229466153 CACTCTCCAGTTGACTGGCCACAAAGACATTACTGAAGCAGGATGCAATACCAATCACTG 229466094 Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895 ||||||| || | || || | ||| | || ||||| | ||| || | |||||||| Sbjct 229466093 CGGCCAGAAAGGA-TTC--CTCTGATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAG 229466037 Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955 | |||||||||||||| | ||| || | ||| || || || || || ||||| |||| Sbjct 229466036 GCATATAGATGGCCCTCAGGAGTCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAG 229465977 Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGT 163015 |||| ||||| || || || ||||| || ||| || | |||||| || ||||| | Sbjct 229465976 AATATGCTATTGGAAATTCTGCCTCTTCTTTACTAAGCGGTTCTGTAATATATTTGCGCT 229465917 Query 163016 CCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 | | | || | | || || | |||||||| | |||| Sbjct 229465916 TCTTGATGAAAGAAGGGCAATCAGCAGTCATGTTTATGTAG 229465876 Score = 95.1 bits (104), Expect = 1e-14 Identities = 226/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | ||||||||| || ||||| ||| | | ||||||| Sbjct 112426810 ACCATCTCCGCATTGGTCTTTATGGGAAAGTCTGTCCCGCATGTATTCAGTAAATATTTC 112426869 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || || |||| || | | || || | | ||||||||| || ||||| || | Sbjct 112426870 CAGGGCAC--TGAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCTGG 112426927 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || ||||| || || | ||||| || || | | |||||||| ||| || | Sbjct 112426928 ACCAGGAGGCGTAAACCACCCGAACCAACTTACTGACCATGAAGACATTTGGGAAGCAGG 112426987 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACA--TCGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| || || | ||| ||| ||||| | Sbjct 112426988 AAATGATGGCCTTGACTGCCTCTTTGAAAGATTCTGGG--GACTTCTCATCCACGTGGAT 112427045 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 |||||||| ||||||||||| || | || | ||| | | || || | || ||||| Sbjct 112427046 GCAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAGCCGTTCAAAGTTTTCAATCTT 112427105 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| ||||| || || |||||||| || Sbjct 112427106 CTCATGGACCACCATAGAGTATGCGATGGGGAAGTC 112427141 >seq13 Length=208334590 Score = 206 bits (228), Expect = 3e-48 Identities = 239/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || || |||| ||||| ||||| || | | Sbjct 147478200 CAGAGAGGGTGAGGCAGGCTATTCCTGAGATCTTCCCGGCACCAAAGGTATTGAAGAGGC 147478259 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| || || ||||||| |||||| ||||| || || | || || || ||| Sbjct 147478260 ACTTGTAACAACCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 147478319 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | |||||| || | |||||| || ||||| || || | Sbjct 147478320 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTATAAGCAGGCTGAACTACAACCCCATGGT 147478379 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| ||||||||| |||||| |||||| || || ||||| || || | Sbjct 147478380 TCTTGCTGAAGGTGATCATGTTTTCTGGGCTCACAGCCTTGATTTTTTGCCATGTCACAA 147478439 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | |||| ||||||||||||||||||||||||||||||| | Sbjct 147478440 TCAAAACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCCGCT 147478499 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | ||||| || ||||| Sbjct 147478500 CTCTTACATCTTGGGTCACCAC 147478521 Score = 116 bits (128), Expect = 4e-21 Identities = 175/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||| | || | ||| |||||||||| Sbjct 147476082 ACAGTTTCCCTGTAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT-- 147476139 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || || ||||| | || || ||||| || ||||| || ||||| Sbjct 147476140 -TCCCCACCTGACTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGACGTTGTCCCA 147476198 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | |||| | | | |||||| || || || || || || | | ||||| | Sbjct 147476199 TTGGGGTGTACGAGAATCTCAGTACTGTTCTCAATCCCTGACCCAGATATCTTCCAGGAG 147476258 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || | ||| ||||| | |||| | ||||||||||| || |||| | ||||| | || Sbjct 147476259 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGTTGGTCTTCAGATAAT 147476318 Query 171743 TCATAGTG 171750 | |||||| Sbjct 147476319 TTATAGTG 147476326 >seq544 Length=134991 Score = 127 bits (140), Expect = 2e-24 Identities = 401/608 (66%), Gaps = 19/608 (3%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | || ||||||||| | | || || | | | Sbjct 63024 TCCAGTTAAAGTAACTAAGGTATAATTTGTTGTTTTTATCTACTTCTTTCAGATACTTTG 63083 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | |||||||||||| | ||| | || | |||| Sbjct 63084 CAAGCTCACTTGGAGAGTTATAATCTTCCACGTGAATGAATGAATCTGCTGGAATATAAT 63143 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| || | || | || || | || |||| || || Sbjct 63144 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACTGAGCCAGCCAGAAAAGCAT 63203 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || ||||| || |||| | ||||| ||||| | ||||| |||| Sbjct 63204 TGTAGAGCTTTTCTGTGATATAATCTTTGTGGATTGAGTTTTCAAAAGACAGATAAAATT 63263 Query 177127 TACAGG--AAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | |||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 63264 TGCAAGTAGAGATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 63321 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 63322 CCCATAGGTATGAATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 63380 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| |||||||| |||||| | || || Sbjct 63381 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTACTTGGCAC---- 63435 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | ||||| ||||| || ||||| | Sbjct 63436 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTG 63494 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGG 177418 | || || | || || | || || ||||| |||| || || | || |||| ||| Sbjct 63495 AATCACGGCGATAAGTCAGAGTCAGGTTGAATAGGTGCTCAATGCCACTCTTTTG--GGG 63552 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || | || Sbjct 63553 TGTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTG 63612 Query 177479 CGTAGGTA 177486 | ||||| Sbjct 63613 CTGAGGTA 63620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578427567764800