Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7 104 6e-17 seq14 96.9 8e-15 seq12 93.3 1e-13 seq1 93.3 1e-13 >seq7 Length=121844099 Score = 104 bits (114), Expect = 6e-17 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || || ||||| || || |||||| | || || ||| || || Sbjct 52639387 CATATATTTGTGAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTTGAACCCTCAGAT 52639446 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| |||||| ||||| || || || ||||||| ||| ||| ||| Sbjct 52639447 ACATTAGAAAATGTAAAGGCTAAGATCCAGGATAAGATAGGAATTCCGCCTGACCAGCAA 52639506 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| | ||| || || ||||| ||||||||||| ||||| || ||| || Sbjct 52639507 AGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGACCTACTTT----GACTACGACACT 52639562 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || | ||| |||||||| ||||| ||||||||||| Sbjct 52639563 CAAAAGGTGTCCACTCTTCATCTTGTATTGAGACTTCG 52639600 >seq14 Length=141755446 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| |||||||||| |||| Sbjct 28257964 CAGATCTTTGTAAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGAGCCCAGTGAC 28258023 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||||||||| || || || ||| || Sbjct 28258024 ACCATTGAGAATGTCAAGGGGAAGATTCAAGAAAAAGAGGGCATCCCCCCAGACCAGCAG 28258083 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| ||||| |||||| |||||||||| | || || | || |||||| || Sbjct 28258084 AGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATC 28258143 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 28258144 CAGAAGGAGTCCACCCTGCACCTGGT 28258169 >seq12 Length=61602749 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 59171842 ACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCC 59171783 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || ||| || || || ||||| || || ||| Sbjct 59171782 AAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAG 59171723 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | ||| | | ||||||||| ||||||||||||| ||||| || Sbjct 59171722 CAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACTCTCCAT 59171663 Query 206374 CTTGTTTTG 206382 || ||| || Sbjct 59171662 CTGGTTCTG 59171654 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 59171614 ACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCC 59171555 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || ||| || || || ||||| || || ||| Sbjct 59171554 AAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAG 59171495 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | ||| | | ||||||||| ||||||||||||| ||||| || Sbjct 59171494 CAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACTCTCCAT 59171435 Query 206374 CTTGT 206378 || || Sbjct 59171434 CTGGT 59171430 >seq1 Length=274330532 Score = 93.3 bits (102), Expect = 1e-13 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||||||| || ||| |||||||| |||| || || ||| Sbjct 255801446 AAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTCTGCTGGCAAG 255801387 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | |||||| | || |||||| | || || ||||| |||||||| Sbjct 255801386 CAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCAT 255801327 Query 206374 CTTG 206377 |||| Sbjct 255801326 CTTG 255801323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181811517905573