Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq14 107 2e-18 seq9 95.1 1e-14 >seq14 Length=141755446 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | | ||||| || || ||||||||||| || ||| || Sbjct 28260687 CAAGCGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCG 28260628 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| ||||| || |||| | |||| || | ||| || ||||| || |||||||| Sbjct 28260627 CCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTC 28260568 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || || | | || | || ||| | ||||||||||| | || Sbjct 28260567 CTTGTCTTGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGT 28260508 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || |||||||||| || || | ||| |||||||| Sbjct 28260507 GATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28260469 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 28258154 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28258095 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || ||||| ||||| || ||| || || | Sbjct 28258094 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCTTGAATCTTCCCCTTGACA 28258035 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||||||||| | || | || |||||||||| || ||| Sbjct 28258034 TTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTT 28257975 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 28257974 ACAAAGATCTGCAT 28257961 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 28258382 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28258323 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || |||||||| || || || || || | Sbjct 28258322 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACG 28258263 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||||||||| | || | || |||||||||| || || Sbjct 28258262 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28258203 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 28258202 ACGAAGATCTGCAT 28258189 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 28258610 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28258551 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || |||||||| || || || || || | Sbjct 28258550 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACA 28258491 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||||||||| | || | || |||||||||| || || Sbjct 28258490 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28258431 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 28258430 ACGAAGATCTGCAT 28258417 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 28258838 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28258779 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || |||||||| || || || || || | Sbjct 28258778 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACG 28258719 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||||||||| | || | || |||||||||| || || Sbjct 28258718 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28258659 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 28258658 ACGAAGATCTGCAT 28258645 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 28259066 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28259007 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || |||||||| || || || || || | Sbjct 28259006 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACA 28258947 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||||||||| | || | || |||||||||| || || Sbjct 28258946 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28258887 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 28258886 ACGAAGATCTGCAT 28258873 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 28259522 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28259463 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || |||||||| || || || || || | Sbjct 28259462 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACG 28259403 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||||||||| | || | || |||||||||| || || Sbjct 28259402 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28259343 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 28259342 ACGAAGATCTGCAT 28259329 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 28259750 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28259691 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || |||||||| || || || || || | Sbjct 28259690 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACG 28259631 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||||||||| | || | || |||||||||| || || Sbjct 28259630 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28259571 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 28259570 ACGAAGATCTGCAT 28259557 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 28259978 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28259919 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || |||||||| || || || || || | Sbjct 28259918 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACG 28259859 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||||||||| | || | || |||||||||| || || Sbjct 28259858 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28259799 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 28259798 ACGAAGATCTGCAT 28259785 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 28260206 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28260147 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || |||||||| || || || || || | Sbjct 28260146 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACG 28260087 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||||||||| | || | || |||||||||| || || Sbjct 28260086 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28260027 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 28260026 ACGAAGATCTGCAT 28260013 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 28260434 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28260375 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || |||||||| || || || || || | Sbjct 28260374 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACA 28260315 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||||||||| | || | || |||||||||| || || Sbjct 28260314 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28260255 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 28260254 ACGAAGATCTGCAT 28260241 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 28259294 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCA 28259235 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || |||||||| || || || || || | Sbjct 28259234 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACG 28259175 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||||||||| | || | || |||||||||| || || Sbjct 28259174 TTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTC 28259115 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 28259114 ACAAAGATCTGCAT 28259101 >seq9 Length=139512083 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||| ||||| | |||||||||||||||||| || ||||| || ||||| | Sbjct 6039528 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGT 6039587 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| |||||||| || | |||||| |||||||||| || Sbjct 6039588 TGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGG 6039627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607547966680