Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq48 107 6e-20 seq15 100 9e-18 seq7 100 9e-18 seq14 98.7 3e-17 seq11 98.7 3e-17 seq3 98.7 3e-17 seq2 98.7 3e-17 seq10 87.8 6e-14 >seq48 Length=333895 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 260369 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 260428 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 260429 CCGGGTTTCGGC 260440 Score = 105 bits (116), Expect = 2e-19 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 236168 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 236109 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 236108 CCCGGGTTTCGGC 236096 Score = 105 bits (116), Expect = 2e-19 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 244364 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 244305 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 244304 CCCGGGTTTCGGC 244292 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 228040 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 228099 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 228100 TCCCGGGTTTCGGC 228113 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 113743 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 113802 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 113803 CCGGGTTTCGGC 113814 Score = 98.7 bits (108), Expect = 3e-17 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 207918 AAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGG 207977 Query 2833 GCTT 2836 | || Sbjct 207978 GTTT 207981 Score = 89.7 bits (98), Expect = 2e-14 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| | | Sbjct 232530 GGCCGAAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTGCGAT 232471 Query 2828 CCCGGGCTT 2836 |||||| || Sbjct 232470 CCCGGGTTT 232462 >seq15 Length=140412725 Score = 100 bits (110), Expect = 9e-18 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 |||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| Sbjct 126075371 TGAAACAGCTCAGTTGGGAGAGCGTTAAACTGAAGATCTAAAGGTCCCTGGTTCAATCCC 126075312 Query 2831 GGGCTTCAGC 2840 ||| |||||| Sbjct 126075311 GGGTTTCAGC 126075302 >seq7 Length=121844099 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 21537682 GGCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 21537741 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 21537742 CCCGGGTTTCGGC 21537754 >seq14 Length=141755446 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 28247414 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 28247473 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 28247474 CCGGGTTTCGGC 28247485 >seq11 Length=79169978 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 63677968 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 63677909 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 63677908 CCGGGTTTCGGC 63677897 >seq3 Length=132848913 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| | | Sbjct 87599307 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGACCCTGGTTCGATC 87599366 Query 2829 CCGGGCTTCAGC 2840 | ||| ||| || Sbjct 87599367 CAGGGTTTCGGC 87599378 >seq2 Length=151935994 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 11917651 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 11917710 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 11917711 CCGGGTTTCGGC 11917722 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 11922808 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 11922867 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 11922868 CCGGGTTTCGGC 11922879 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 77087453 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 77087512 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 77087513 CCGGGTTTCGGC 77087524 >seq10 Length=69359453 Score = 87.8 bits (96), Expect = 6e-14 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| | |||||| |||||||| |||| ||||||||||||||||||||||||||| Sbjct 8139688 TGGCCGAAATGCCTCAGTCGGGAGAGCCTTAGTCTGAAGATCTAAAGGTCCCTGGTTCAA 8139629 Query 2827 CCCCGGGCTTC 2837 |||||| ||| Sbjct 8139628 TCCCGGGTTTC 8139618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849493733385