Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq13 289 3e-73 seq6 159 4e-34 seq5 152 6e-32 seq9 136 5e-27 >seq13 Length=208334590 Score = 289 bits (320), Expect = 3e-73 Identities = 256/320 (80%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| |||| || | || ||||||||| || || || | | |||||| ||| Sbjct 147478521 GTGGTGACCCAAGATGTAAGAGAGCGGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 147478462 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 147478461 CAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTGAGCCCAGAA 147478402 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || || ||||| |||| ||||| || || ||||| ||||||||||||||| Sbjct 147478401 AACATGATCACCTTCAGCAAGAACCATGGGGTTGTAGTTCAGCCTGCTTATAAGGACAAG 147478342 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| || || |||||||||||||| Sbjct 147478341 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 147478282 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| ||||| || ||||| |||||||| || |||||||| | ||||| ||||| || Sbjct 147478281 GAGGATGAGGGTTGTTACAAGTGCCTCTTCAATACCTTTGGTGCCGGGAAGATCTCAGGA 147478222 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 | ||||||||||||||||| Sbjct 147478221 ATAGCCTGCCTCACCCTCTC 147478202 Score = 212 bits (234), Expect = 7e-50 Identities = 216/282 (77%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| || | || || |||||||| | ||| ||||| || || |||| Sbjct 147476352 TCCCAGTACAGCCCACAGTATCCCTTCACTATAAATTATCTGAAGACCAACTAAATATCA 147476293 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||| ||||| | ||| ||| | |||||||| || ||||||| | Sbjct 147476292 CTTGCTCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAGATATCTGGGTCAGGGA 147476233 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||| ||||||| ||| |||| || | ||||| || || ||||| ||||| | | Sbjct 147476232 TTGAGAACAGTACTGAGATTCTCGTACACCCCAATGGGACAACGTCTGTCACCAGCATCC 147476173 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| | |||||||||||||||||| |||| |||||||| |||||||| ||| ||||| Sbjct 147476172 TCCAGATCAAAGACCCCAAGAGTCAGGTGGGGAAGGAGGTGATCTGCCAGGTGCTGCACC 147476113 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| | ||| ||| ||| ||||||||||| | ||| |||| Sbjct 147476112 TGGGGACTGTGACTGACTACAGGGAAACTGTGAACAAAGGTA 147476071 Score = 129 bits (142), Expect = 7e-25 Identities = 208/292 (71%), Gaps = 14/292 (5%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| ||| | |||| || || ||||| ||||||| |||| |||||| | Sbjct 29229658 GTACTCCCTGGTATTTGTCATTGGCCTGATCGGCAACATCCTGGTGGTCCTGGTCCTCCT 29229599 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 29229598 GCAGTACAAGAGGCTCAGAAGCATGACCACCATCTACCTCCTCAACCTGGCCATTTCTGA 29229539 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGGTG 8788 |||| | | | || || || || || |||||| ||| | | || || ||||| Sbjct 29229538 CCTGATCTTCCTCTTTACACTGCCTTTCTGGATTGACTACAAGCTGAAGGATGACTGGAT 29229479 Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTAT-AGTGGGC-CT-TTGCAACGTGGCAC 8845 | || | | |||||||||||||| | ||||| || || || |||| Sbjct 29229478 TTTTGG-------CGATCACATGTGTAAGTTGCTCTCTGGGCTCTATTTCA--TTGGC-T 29229429 Query 8846 TGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 ||||||| ||| || | || ||||||||| |||| | |||||||| || || Sbjct 29229428 TGTACAGTGAAATCTTCTTCATCATCCTGCTGACCATCGACAGGTACCTAGC 29229377 Score = 127 bits (140), Expect = 2e-24 Identities = 539/839 (64%), Gaps = 52/839 (6%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATG---CCCTGGTGATCCTAGTCCT 8666 ||| || ||||||||| |||| || | ||||||| || ||||| | | ||| Sbjct 29285154 GTATTCCCTGGTGTTTGGCGTTGGTCTGCTGGGCAATGTAGCCGTGGTGGTGAT---CCT 29285210 Query 8667 CATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGG 8726 || ||| |||||||||||| | || ||||||||||||| ||||||||| ||||| || Sbjct 29285211 CACAAAATACAAGAGGCTCCGAATTATGACCAACATCTACCTGTTCAATTTGGCCATTTC 29285270 Query 8727 TGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGG 8786 |||| |||| | | ||||| || || || ||||||||| | | | | || | Sbjct 29285271 TGACTTGCTCTTCCTATTCACGCTGCCATTCTGGATTCAC-TATATTTTGCGGAA----- 29285324 Query 8787 TGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACT 8846 | ||||| | |||||| || ||||| || | || || | | || ||| | Sbjct 29285325 GGAGTGGGGTTTTGGCCACCATATATGTAAATTCCTCTCTGGGCTCTACTACCTGGGCTT 29285384 Query 8847 GTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTA 8906 |||||| || || | || |||||||||||||| | ||| ||||||| || |||| | Sbjct 29285385 GTACAGTGAGATCTTCTTCATCATCCTGTTGACCATAGACCGGTATCTGGCCATTGTCCA 29285444 Query 8907 CGCGGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGC 8966 || || | | | ||| | | | || ||| || |||| || | | Sbjct 29285445 TGCTGTATTTGCCCTTCGAACCCGGACCATCACTTTTGGTATCATCACCAGTGTCTTCAC 29285504 Query 8967 CTGGATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGC 9026 |||||| ||||| | | | | | || | || || |||||||| ||||| ||| | | | Sbjct 29285505 CTGGATCCTGGCAGGGCTAGCAGCCCTCCCTGAATTTATCTTCTATGAGTCCCAAGAGGA 29285564 Query 9027 CACAGGCAAGGGGGTCTGCCAAGCCTCCT---ACACAGACT----------TTTGGAAGG 9073 || | | |||||| || |||| | || ||| | |||||| Sbjct 29285565 GTTTGGAGATGTGGTCTG-CAGTCCTCTTTACCCAAAGAATGGAGAAAATACCTGGAAGC 29285623 Query 9074 GGGTTGATGTTACCAGCATGACCAT----GGTCACCCTCATCCTGCCTTTGCTTATCATG 9129 | ||| || |||| || |||| || |||||| |||| || ||| Sbjct 29285624 TTTTCCATGCCCTTAGGATGAATATTTTGGGTCTTGCT----CTGCCTCTGCTCATTATG 29285679 Query 9130 GCCTTCTGCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAA 9188 | ||||||||| |||||| || || || | | |||| || || || ||| Sbjct 29285680 GTTGTCTGCTACTCAGGAATCATTAAAACACTGCTGAGATGCCC-CA----GTAGAAAAA 29285734 Query 9189 CCTGC-ACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCC 9247 | | | ||| || ||||||||| |||| ||||| | | || |||| |||| | Sbjct 29285735 AATACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTCTTCATCTTCTGGACAC 29285794 Query 9248 CCTACAACGTCCTGCTCATTTTACACAC-CTACCAAGAGGCCATTTTTGGGCCAGACTGT 9306 |||||||| | | ||| || | | | | | || | || | |||||| |||| Sbjct 29285795 CCTACAACCTGGTTCTCCTTCTCCTTGCTTTTCAAATAAACC---TGGAGGCCAG-CTGT 29285850 Query 9307 GAAGCGCGGCGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACC 9363 ||| | | ||| | ||||| ||||||| ||||| | ||| |||||||| | Sbjct 29285851 GAA---CAGAGCAAACAGCTGGACCTGGCCCTGCTGGTGACGGAGGTGATCGCCAATTCA 29285907 Query 9364 CACTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422 |||||||||||||||||||| ||||| || ||||| ||||| | |||||| || |||| Sbjct 29285908 CACTGCTGCGTCAACCCCGTAATCTATGCCTTTGTTGGCGAGAGGTTCCAGAAGCACCT 29285966 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | |||||| | | ||||| ||||| |||| |||| || Sbjct 29372850 TACTCACTGGTGTTCATCTTTGGGTTTGTGGGCAACTTGCTGGTTGTCCTCATCCTGATC 29372909 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| | ||| | || |||||| |||||| |||| ||||||||||| | ||| Sbjct 29372910 AACTGCAAAAAGCTGAAGAGCATGACTGACATCTACCTGCTCAACCTGGCCATCTCGGAC 29372969 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | |||||| |||| || ||| ||||| Sbjct 29372970 CTGCTGTTCCTCTTCACCATCCCGTTCTGGGCTCACT 29373006 >seq6 Length=170843587 Score = 159 bits (176), Expect = 4e-34 Identities = 135/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 105645750 CTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 105645809 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||| |||||||| ||||||| |||||||| |||||| || |||||||| | Sbjct 105645810 GGGCACACCCAGTCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATT 105645869 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 ||||||| |||||||| ||| ||||| || || || |||||| Sbjct 105645870 TACCACGTAGAACTGGCAAAGGGCATGGCATGGGGGGAGGGCCATG 105645915 Score = 145 bits (160), Expect = 9e-30 Identities = 240/338 (71%), Gaps = 14/338 (4%) Strand=Plus/Minus Query 146807 GGTGGTAGCCCTCGAGGGCAAAATCTTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCC 146866 ||| |||||| || | ||| ||||| | | |||| || | || | ||| || Sbjct 62495027 GGTTGTAGCCTTCAATATAAAAGTCTTCAGTCTTGAAGTCATTGATTTTCTCAACTTT-- 62494970 Query 146867 TCAAA--ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGG 146922 ||||| || |||||||| ||||| || | || |||| | |||| |||||||| Sbjct 62494969 TCAAAGGATTTTGAGCTTTGGGAAAGGCCTTGG--TCCTCACTGAAGCTCTATTTTCAGT 62494912 Query 146923 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGC 146982 || || | | | || ||| | | | || | ||| ||||| ||||||| ||| Sbjct 62494911 GGTTCAATGCGATTCAGGCCAATGCGGGCATGTCCCGAAGTGTGTTCAAAGTCTAT-GGC 62494853 Query 146983 TTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAG 147042 || ||||| || | ||| | | |||||||||||||| | ||||||||| ||||||||| Sbjct 62494852 TTCAGGCCTGTGATGTGTGGGATCATGTAGGTGAGCAAGGGGTAGCTGGCAATGTTGAAG 62494793 Query 147043 GGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCG 147102 | || ||||| ||||||||||||||| ||||||||||||| | || ||||||| || Sbjct 62494792 TGCACGCCCAGACCCATGTCCCCCGACTCCTGGTACAGCTGGTAGGACAGCTCCCTGT-- 62494735 Query 147103 GCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAG 147140 || ||| |||| ||| ||| |||||||| | ||||| Sbjct 62494734 -TCA-GTAGAACTTGCAAAGGGTGTGGCACAG-GGCAG 62494700 >seq5 Length=104526007 Score = 152 bits (168), Expect = 6e-32 Identities = 177/235 (75%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 |||| |||||||| ||||| |||||| || |||||||| || | |||| | ||| Sbjct 23434274 AGCTTCATTTTCAGCGGCTCAGTGTGGTTCAGATAGACGTGTGCATATCCCAAAGCGTGT 23434333 Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGA-GTA 147026 |||||||| ||| |||| || || || ||||| | | | ||||||||||||| || ||| Sbjct 23434334 ACAAAGTCGCCCAGCTTCAGACCTGTAACGTGTGTGATCGTGTAGGTGAGCAGGGAGGTA 23434393 Query 147027 GCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 |||| ||||||||||| || |||||| ||| || ||||||||||| || |||||||| Sbjct 23434394 GCTGCTGATGTTGAAGGGCACACCCAGGACCA--TCTCCCGACCTCTGATATAGCTGGCA 23434451 Query 147087 CGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCAC-GGCGGCAG 147140 | ||||| | || | || | |||||||| ||| | ||||| ||| |||| Sbjct 23434452 GGGCAGCTCACAGTTCACTACACAGAACTGGCAAAGGGCGAGGCACAGGCAGCAG 23434506 >seq9 Length=139512083 Score = 136 bits (150), Expect = 5e-27 Identities = 129/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| ||||||||||||||||| ||||||||| |||| || || | Sbjct 67403889 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGGAAGATGTAA 67403830 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| |||| |||| ||| || ||| || |||||||| || |||| Sbjct 67403829 TGCCGAAGGCAGAGA------------GTGATGGGGAGGATATCAAGGAGCACGTGAACT 67403782 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| || ||||||||||||| ||| Sbjct 67403781 CCCTGGGGGAGAAGCTGAAGACCCTCAGGCTGAGGCTGCGGCGCTGT 67403735 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | |||||| |||||||| ||| |||||||||| || || || ||||||| Sbjct 67401559 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGGGTGAGTTTGACATCTTCATCAACTACA 67401500 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||||| |||||||| | || |||| Sbjct 67401499 TAGAAGCCTACATGACGATGAAGATGA 67401473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583483529023200