Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq14 131 2e-25 seq12 114 1e-20 >seq14 Length=141755446 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 28258608 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAA 28258549 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||||||||| |||||| ||| | | | Sbjct 28258548 GATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATT 28258489 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||| |||| ||||| || ||||| ||||| || ||||| Sbjct 28258488 CTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 28258429 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 28258428 GAAGATCTGCAT 28258417 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 28259064 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAA 28259005 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||||||||| |||||| ||| | | | Sbjct 28259004 GATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATT 28258945 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||| |||| ||||| || ||||| ||||| || ||||| Sbjct 28258944 CTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 28258885 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 28258884 GAAGATCTGCAT 28258873 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 28259292 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAA 28259233 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||||||||| |||||| ||| | | Sbjct 28259232 GATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACGTT 28259173 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||| |||| ||||| || ||||| ||||| || ||||| Sbjct 28259172 CTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 28259113 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 28259112 AAAGATCTGCAT 28259101 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 28258380 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAA 28258321 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||||||||| |||||| ||| | | Sbjct 28258320 GATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACGTT 28258261 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||| |||| ||||| || ||||| ||||| || ||||| Sbjct 28258260 CTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 28258201 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 28258200 GAAGATCTGCAT 28258189 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 28258836 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAA 28258777 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||||||||| |||||| ||| | | Sbjct 28258776 GATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACGTT 28258717 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||| |||| ||||| || ||||| ||||| || ||||| Sbjct 28258716 CTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 28258657 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 28258656 GAAGATCTGCAT 28258645 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 28259520 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAA 28259461 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||||||||| |||||| ||| | | Sbjct 28259460 GATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACGTT 28259401 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||| |||| ||||| || ||||| ||||| || ||||| Sbjct 28259400 CTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 28259341 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 28259340 GAAGATCTGCAT 28259329 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 28259976 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAA 28259917 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||||||||| |||||| ||| | | Sbjct 28259916 GATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACGTT 28259857 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||| |||| ||||| || ||||| ||||| || ||||| Sbjct 28259856 CTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 28259797 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 28259796 GAAGATCTGCAT 28259785 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 28260432 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAA 28260373 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||||| |||||| ||| | | | Sbjct 28260372 GATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACATT 28260313 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||| |||| ||||| || ||||| ||||| || ||||| Sbjct 28260312 CTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 28260253 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 28260252 GAAGATCTGCAT 28260241 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 28260660 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAA 28260601 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||||| |||||| ||| | | | Sbjct 28260600 GATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACATT 28260541 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||| |||| ||||| || ||||| ||||| || ||||| Sbjct 28260540 CTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 28260481 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 28260480 GAAGATCTGCAT 28260469 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 28259748 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAA 28259689 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||||| |||||| ||| | | Sbjct 28259688 GATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTT 28259629 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||| |||| ||||| || ||||| ||||| || ||||| Sbjct 28259628 CTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 28259569 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 28259568 GAAGATCTGCAT 28259557 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 28260204 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAA 28260145 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||||| |||||| ||| | | Sbjct 28260144 GATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTT 28260085 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||| |||| ||||| || ||||| ||||| || ||||| Sbjct 28260084 CTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 28260025 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 28260024 GAAGATCTGCAT 28260013 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 28258152 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAA 28258093 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||| || || ||||| ||| | | | Sbjct 28258092 GATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCTTGAATCTTCCCCTTGACATT 28258033 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||| |||| ||||| || ||||| ||||| || || || Sbjct 28258032 CTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTTAC 28257973 Query 35725 AAATATCTGCATT 35737 ||| ||||||||| Sbjct 28257972 AAAGATCTGCATT 28257960 >seq12 Length=61602749 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 59171903 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAA 59171962 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || |||||| ||| |||||| ||||| | | Sbjct 59171963 GATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACATT 59172022 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 59172023 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 59172082 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 59172083 GAAGATCTGCATTTTG 59172098 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 59171447 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 59171506 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| |||||| ||||| | | Sbjct 59171507 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 59171566 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || ||||| || ||||| Sbjct 59171567 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCAC 59171626 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 59171627 GAAGATCTGCAT 59171638 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 59171675 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 59171734 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| |||||| ||||| | | Sbjct 59171735 GATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 59171794 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || ||||| || ||||| Sbjct 59171795 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCAC 59171854 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 59171855 GAAGATCTGCAT 59171866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450790145794040