Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq9 127 3e-24 >seq9 Length=139512083 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055 |||| ||||| || || | || ||||| || | ||| || | | ||| | ||| | | Sbjct 127853690 AGATAATTGATGGTGAGATGTATCCTCCGACAGCCAAAGACACTCAAGTCGAGATGATCT 127853631 Query 214056 ACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCG 214115 || || | ||| ||| | | || || || |||| | ||| | ||||| || | Sbjct 127853630 ACCCGCCTCACACTCCTGAACACCTCCGCTTTGCCGTGGGGCATGAGGTCTTTGGTCTGG 127853571 Query 214116 TGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACG 214175 |||| ||| | ||| ||||||||| ||||||||| | || || || || || ||||| | Sbjct 127853570 TGCCTGGTCTGATGATGTACGCCACAATCTGGCTGCGGGAACATAATAGAGTGTGCGATG 127853511 Query 214176 TGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 |||| ||||| ||||||||||||||| |||| |||| ||||||||||| Sbjct 127853510 TGCTTAAACAGGAGCACCCGGAATGGGACGATGAACGGCTGTTCCAGA 127853463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723335257401120