Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq15 307 1e-78 seq3 129 8e-25 seq4 116 5e-21 seq9 111 2e-19 >seq15 Length=140412725 Score = 307 bits (340), Expect = 1e-78 Identities = 631/937 (67%), Gaps = 27/937 (3%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTTT 39327 ||| |||||| |||| || | |||| ||| ||| | ||||| |||||||| | Sbjct 19879760 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCCGACTCGACATCACTCCCATCCT 19879701 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 || || || || || | ||||| | || || || || ||||||| ||| ||||| || Sbjct 19879700 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCTTCCAGTGAAATATTCTC 19879641 Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAA 39447 ||| || ||||| ||||| | | | | || | || || | || | | Sbjct 19879640 CATAAAGTCAAAGGGATTTTCTACTCTGAAAACCTTGCTGAAGCCCAGCTCCAGCCTGAG 19879581 Query 39448 TCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 39507 ||| ||||| || || || ||||| |||||| | |||||||| || |||| || Sbjct 19879580 TCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAATTCATCCCAGTGAGCTT 19879521 Query 39508 AACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGA 39567 || || || |||| | | ||||| | ||| || || || | | ||||| Sbjct 19879520 CACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACTGCATTGATGATTATTTC 19879461 Query 39568 TGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTC 39627 | | ||| || || ||| || | | |||| ||||| | |||||| ||||| Sbjct 19879460 TTTCACTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTGAACATCAGGCAGGCAAAGTC 19879401 Query 39628 ACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAG 39687 || |||| ||||||||||| ||||| | || || |||||||| || Sbjct 19879400 GCAGTGTAAACCCTCATCTCTGCTAAT--------------ACGTCAGGCCAGGCATCAG 19879355 Query 39688 ACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTAC 39747 || || || |||||||| ||| ||| |||||||| ||||||||||| || ||||| || Sbjct 19879354 TCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAAAAGAAAATTCCTTCCAC 19879295 Query 39748 TGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCAT-TATGT-----ATCCACTT 39801 || ||||| | | | | ||||| || || | | | | ||| ||||| | Sbjct 19879294 GGCAGCAAAGGTGATGACACGTTCTCC---ACGTGGAGCCTCTTTGTCCCCCATCCAGTG 19879238 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | ||||| || || | ||||||||||||||||||||| || || ||||| |||||| | Sbjct 19879237 CAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAGAAA 19879178 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 | |||| | |||||| | || ||||| || | || ||||||||||| ||||| Sbjct 19879177 TTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAGGAGGCTATACATTTCAGAATG 19879118 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 |||||||| || || || || || || || ||||| | ||||| ||||| || | || Sbjct 19879117 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTCTGTAATCTGAATTTC 19879058 Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 | | ||| | ||| |||| ||||||| ||| || |||||||| || ||||| || || Sbjct 19879057 TTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCACTTGCTGCAAAGAAAGC 19878998 Query 40042 CAATA-CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATAT 40100 ||| | |||| |||||||||| | || | || ||| | | ||||| | || Sbjct 19878997 CAAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTCATGGTTTCCCAGTGTTGAATGC 19878938 Query 40101 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGT 40160 | || || | | || || |||||||||||||| || ||||||||||| || ||||| | Sbjct 19878937 CCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCTGCCTTCTTATACATCT 19878878 Query 40161 TCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||| || ||| | |||| || ||||| || ||||| Sbjct 19878877 GCCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq3 Length=132848913 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | |||||| ||||| || || |||||||| || || || || | Sbjct 126360977 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCT 126361036 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||||| |||||||| |||||||||||||||||||| || || ||||| | Sbjct 126361037 TGAGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGG 126361096 Query 39759 CAAC 39762 | || Sbjct 126361097 CTAC 126361100 >seq4 Length=130910915 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || ||||| |||||||||||||| ||||| | || | Sbjct 34847659 CCTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCT 34847600 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| | Sbjct 34847599 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 34847540 Query 39759 CAAC 39762 | || Sbjct 34847539 CCAC 34847536 >seq9 Length=139512083 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| ||||||||||| || ||||| | || Sbjct 6031380 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATATTACTGGTGTAAGGTTCAATGGAC 6031439 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||| ||| ||||| || || ||||| ||||| ||||| | | ||| || Sbjct 6031440 TCATTATTTCCCAAAATCTGAGCGGTGGAAGCAGTAGGCATCGGTGCGATAAGTAAGCTG 6031499 Query 68839 TTTC 68842 |||| Sbjct 6031500 TTTC 6031503 Score = 86.0 bits (94), Expect = 9e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 69492 TTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGG 69551 ||||||||| | ||||||| || ||||| |||||||| || ||||||| ||||| Sbjct 6040773 TTTTTCATACCTTTCATATAGCTTCTCAAATTCTTCTCCCCAGACCTCATCCAGACCAGG 6040832 Query 69552 ACATTCATTTGGACACATCAATGACCA 69578 ||| ||||||||||||||||| ||||| Sbjct 6040833 ACACTCATTTGGACACATCAAGGACCA 6040859 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || || || || || || ||||| || |||||||| || ||| Sbjct 6048519 GTGCCAGCATTGAAGAGAGTGGGCGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 6048578 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||||||||||| | || ||||| | ||||| || | | || | ||||||| Sbjct 6048579 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 6048638 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 6048639 ATATGCTGTGGTCTTTC 6048655 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| ||||| || ||||| || || || | ||| || || ||||| | Sbjct 6054765 CACCACTGAACACTTTCTTTGTCTCTTTGTGCAAGTTGGAGACGGCAATCCTCGCTGCCA 6054824 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | || || || || || |||| || || || || | Sbjct 6054825 GGATGGCATAGTCAGGGTGCTTAGTCGTCAGGGTGGCAGCCGTTTCAGCCGCCAAAGTGT 6054884 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 | | ||| | || || || ||| | |||| ||||| || |||||||||| Sbjct 6054885 CCAGTTCCACCGTCGTGACCCCGCTGTATAAGCCTTGGATTACTTTCATGG 6054935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686903536561320