Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq15 253 2e-62 seq3 111 1e-19 seq4 104 2e-17 seq6 87.8 1e-12 >seq15 Length=140412725 Score = 253 bits (280), Expect = 2e-62 Identities = 602/896 (67%), Gaps = 29/896 (3%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| || |||| |||||||| ||||| ||||| || || ||| |||| Sbjct 19878841 TTTGTCATCTTTCCTATCAAATACCATGACATCTGGCAGATGTATAAGAAGGCAGAGGCT 19878900 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || ||||||||||| || || || | | | || | | | ||| ||| | | Sbjct 19878901 TCCTTTTGGACAGCTGAGGAGGTGGGCCTCTCCAAGGGCATTCAACACTGGGAAACCATG 19878960 Query 43820 AAACCACAAGAAAAACATTTTATATCTT-TGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 || || | || | | ||||||| || | | ||||| || ||||| || || || || Sbjct 19878961 AAGCCTAAGGAGAGATATTTTATTTCACATCATCTTGGCTTTCTTTGCAGCAAGTGATGG 19879020 Query 43879 GATAGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936 || || ||||||| ||||| ||| | || || |||||| |||| ||||| |||||| Sbjct 19879021 CATCGTGGATGAAAACTTGGTGGAGTGGTTTAGC-CAAGAAATTCAGATTAC-AGAAGCT 19879078 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || ||||| ||||| || ||||||||||| ||||| || ||||| |||||||| || || Sbjct 19879079 CGTTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGCCTC 19879138 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGC-ATCGATTGTTTAATGCGATAGA 44055 || || ||||| |||||||||||| | || |||| | | || ||||| || || Sbjct 19879139 CTCATTGATACTTACATCAAAGATTCCAAAGA-AAGCGAATTTCTCTTCAATGCCATCGA 19879197 Query 44056 AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAA 44112 ||| | ||| | || | | |||||||||||| | | ||||| | | | Sbjct 19879198 GACAATGCCTTGTGTAAAGAAGGAGGCAGACTGGGCCTTGCACTGGATGGGGGACAAAGA 19879257 Query 44113 TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172 | | | ||||||||| | || | ||||| | |||||||| ||||||||||| || Sbjct 19879258 GGCTCCACGTGGAGAACGTGTCATCACCTTTGCTGCCGTGGAAGGAATTTTCTTTTCTGG 19879317 Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232 || ||||| ||| ||| ||| | ||||||||||| |||||||||| |||||| Sbjct 19879318 TTCTTTTGCATCCACATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTGACGT---- 19879373 Query 44233 AAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGG 44292 || || | ||||| || ||||| ||||| ||||| ||| || | || Sbjct 19879374 ----------ATTAGCAGAGATGAGGGTTTACACTGCGACTTTGCCTGCCTGAT-GTTCA 19879422 Query 44293 ATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGT 44352 | || | || | || ||||| ||| | | | ||| || | | | ||||| Sbjct 19879423 AACTC-CTGCTAC-ACAAACCTTCGGAGCAGAGAGTGAAAGAAATAATCATCAATGCAGT 19879480 Query 44353 AAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TG 44411 | ||||||||| || || | | | | | || || || | | || ||||| || Sbjct 19879481 TAGGATAGAACAGGAGTTCTTCATAGAGGAGCTGCCGGTGAAGCTCACTGGGATGAATTG 19879540 Query 44412 AACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTT 44471 || ||| ||||| || || ||||| | | | ||||| | | |||| ||||| | Sbjct 19879541 CAC-TTTAATGAAACAGTACATTGAGTTCGTGGCAGACAGACTCAGGCTGGAGCTGGGCT 19879599 Query 44472 GCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAG 44531 | || | | ||| |||| || ||||| |||||||| |||||||| |||||| Sbjct 19879600 TCAGCAAGGTTTTCAGAGTAGAAAATCCCTTTGACTTTATGGAGAATATTTCACTGGAAG 19879659 Query 44532 GCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | || || ||||| | ||| || | || || || |||||| | ||||| || ||| Sbjct 19879660 GGAAGACGAACTTCTCTGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATG 19879715 >seq3 Length=132848913 Score = 111 bits (122), Expect = 1e-19 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||||| ||||| || ||||| ||||| || |||||||| Sbjct 126363459 CGGTTTAGCCAAGAAGTTCAGATTACC-GAAGCTCGTTGTTTCTATGGCTTCCAAATTGC 126363401 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| || || || || || || |||||||||||| Sbjct 126363400 CATGGAAAACATACATTCTGAAATGTATAGCCTCCTCATCGACACTTACATCAAAGAT 126363343 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 126361112 GGAGAACGGGTCGTAGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGGTCTTTTGCA 126361053 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||||| ||| | ||||||||||| |||||||||| |||| ||||| || || | Sbjct 126361052 TCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTGACCTTTTCCAACGAACTT 126360993 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 126360992 ATTAGCAGAGATGA 126360979 >seq4 Length=130910915 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||| ||||| |||||||| || ||||| ||||| || ||||| ||| Sbjct 34847536 GTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCTGG 34847595 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 ||||||||| ||||| | |||||||| | |||||||| ||||| | || || | ||| Sbjct 34847596 TTAAAGAAAAGAGGTCTTATGCCTGGACTCACGTTTTCCAATGAACTCATCAGCAGAGAT 34847655 Query 44255 GA 44256 || Sbjct 34847656 GA 34847657 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 34856140 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGA 34856199 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 34856200 AACGAGTTTCAGAGTATCAGCG 34856221 >seq6 Length=170843587 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 || ||||| ||||| ||||| || ||||| || || ||||| || | || || ||| Sbjct 105645887 TGCCAGTTCTACGTGGTAAATGGGGAGCTGTCCTGCCAGTTGTACCAGCGGTCGGGAGAC 105645828 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 |||||||| || || || || ||||| || || || || |||||||| || ||||| ||| Sbjct 105645827 ATGGGACTGGGTGTGCCCTTCAACATCGCCAGCTACGCCCTGCTCACCTACATGATCGCA 105645768 Query 41196 CAC 41198 ||| Sbjct 105645767 CAC 105645765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453030631065