Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq9 82.4 6e-11 >seq9 Length=139512083 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 131030 GCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTT 131089 |||||||| |||||||||||| ||||| ||||| |||||||| || || ||||| Sbjct 6035141 GCCAGGTCACAGCTAGCTTCCAAGGCTCCATAATAGATGGTTTCAAAGATCTGCTTATTC 6035200 Query 131090 AATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGA 131149 ||| | || | ||||| |||| || |||| | ||||||||| ||||| ||| Sbjct 6035201 AATAACTGGGCCTCTGGACTCTCAAAAGGGTATCTCATCAGAATAAAAGCATCTGCCAGA 6035260 Query 131150 CCCTGTATCCCAA 131162 || |||| ||||| Sbjct 6035261 CCTTGTACCCCAA 6035273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931225341656