Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq9 82.4 1e-10 >seq9 Length=139512083 Score = 82.4 bits (90), Expect = 1e-10 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || |||||||| | |||||||| || | |||| | || || || || Sbjct 6039514 CTCATCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCC 6039573 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| || || | ||| |||||||||||||| || || || Sbjct 6039574 CAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTTCC 6039633 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 ||||| ||||| || | || || || | ||||| Sbjct 6039634 TGTCTCTGTCTGCGACTCGATGATGGCATACCAAA 6039668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027187704800