Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq6 82.4 6e-11 >seq6 Length=170843587 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||||||||| |||||||| ||||| || ||| || || ||||| || |||||| Sbjct 105645757 CCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACA 105645816 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || || ||||| |||||||| | || || | ||| || || || | | | ||| Sbjct 105645817 CCCAGTCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTTACCACG 105645876 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCAT 111935 || || || ||||| |||| || || || | ||||| Sbjct 105645877 TAGAACTGGCAAAGGGCATGGCATGGGGGGAGGGCCAT 105645914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391942671798919